YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39581373, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	36	0.59
Transmembrane Helix	37	56	0.84
Cytoplasmic	57	66	0.62
Transmembrane Helix	67	87	0.91
Non-Cytoplasmic	88	96	0.57
Transmembrane Helix	97	118	0.93
Cytoplasmic	119	178	0.69
Transmembrane Helix	179	201	0.80
Non-Cytoplasmic	202	213	0.75
Transmembrane Helix	214	234	0.87
Cytoplasmic	235	283	0.92
Transmembrane Helix	284	303	0.86
Non-Cytoplasmic	304	332	0.84
Transmembrane Helix	333	354	0.92
Cytoplasmic	355	367	0.73
Transmembrane Helix	368	387	0.91
Non-Cytoplasmic	388	397	0.68
Transmembrane Helix	398	420	0.92
Cytoplasmic	421	466	0.86

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ERKISTCLDR VELEKKHFDM INERIVDDVT MDQFYKPHSI TVLVLVIACL IYKAAAGKTD  60
   61 NSTETNYYEG FLGAGALFLL ISALTFPNGP FIRPHPILWR VIFGLSVIYV IVLQFALFQN 120
  121 YEDLKKILTW LDPEGLGQKS LEEKEYASDC WDLSFDKIWS HVDFFAFSHF TGWIMKTLLL 180
  181 RHWVLCWFIS IIWEFTELMF IDVLPNFAEC WWDSLILDVL LCNGIGIYVG MKLCEFLQMR 240
  241 QFHWESIRNI KTRRGKMKRF ALQFTPASWS GYDWFYSRSF SKAIRRTFLL TFLVSFWLVK 300
  301 LNFSNNYSNP MQLAELNTFF IKHIFAIDTK HPVVFWRIIL IAVIAAPTIR QFYVFSTDPL 360
  361 TRRVGMQSWV FVVICVLELA ICVKCGGDVF AKTNVWNLAL WIAAIIIGTI FCILASTWYA 420
  421 ENFGPTARVL VKGRRRLCYL ESSHENLGIL KDDVIKKREE YLTPKR