YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|157756585
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDPDEVNQAL GHYLNDSESG ELVVEDSTTV QVTNPEARKT GDKIEVYYSR KTTVVSPTNS  60
   61 DDEEGEFCSD SELLPAQGGH RSRATSFAGR VRAGSDDEMN PKHTVLRYRR KKGGQWREVN 120
  121 AQGTPDKRKD DEDELEVDVK EDRSEQTGIV TKTYEARWKV LKYEHLPEWL QDNEFLRHGH 180
  181 RPPLPSFAEC FKSIWSLHTE TGNIWTHLIG CVAFFLLACW FLTRPDNHIQ FQEKVVFSFF 240
  241 FAGAVCLGLS FAFHTLSCHS VNVVKIFCKL DYMGISLLII GSFIPWIYYG FYCRREPKIT 300
  301 YIAMVCVLGI GAIVVSLWDK FSESKYRPVR AAVFVGMGCS GVIPTIHYII TDGVHSLFAD 360
  361 NSFHWLLLMA FLYLLGAALY ATRTPERFFP GKCDIWFQSH QLFHTCVVIA AFVHYYGISE 420
  421 MAFARLNEQC PVR

Type	Start	End	Confidence
Cytoplasmic	1	202	0.90
Transmembrane Helix	203	223	0.94
Non-Cytoplasmic	224	234	0.84
Transmembrane Helix	235	258	0.87
Cytoplasmic	259	269	0.76
Transmembrane Helix	270	290	0.92
Non-Cytoplasmic	291	298	0.77
Transmembrane Helix	299	318	0.97
Cytoplasmic	319	328	0.78
Transmembrane Helix	329	350	0.92
Non-Cytoplasmic	351	361	0.83
Transmembrane Helix	362	382	0.93
Cytoplasmic	383	399	0.79
Transmembrane Helix	400	418	0.85
Non-Cytoplasmic	419	433	0.79