YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|187022135, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPPRRRGPAP PPSQNQSTTS VPAQRTSGVT LSVHPIWPDI QFTQGELFFE CTLFLYSVLA  60
   61 LFLQYLNIYK TLWWLPKSYW HYSLKFHLIN PYFLSCVGLL LGWRVTVCFW KTITEVIATI 120
  121 SANRSQFIQS SLMIIEYAAI KTPVMTLIIT SFLFSFNRVC HDFPNQSVLW FLFPILCYIF 180
  181 IFRSEIIGWF GRLRDLLGKW RRKEVDFGGL CDRLMDSPPA QIDLESVLHM CSDNPAQIRE 240
  241 EIQVLIDDLV LRVKKSIFAG VSTAFLSIML PCIFVPYKTS QGMPQKILIN EFWECQLGIV 300
  301 VGLTAFSLYV AYLSPLNYLD LLHRAAIHLG SWHQIEGPRI GHTGSMIAAP TPWNEFCLYN 360
  361 HGETVQMPDG RCYRAKASHL IRTVAAHPES SRHNTFFKVL QKPHYLINTM CTFEFLIFIQ 420
  421 FWMLVLTNDW QHIVTFVLLM FANYLLFAKL FKDKIILGRI YEPSQEDLLL MHQLHQER

Type	Start	End	Confidence
Cytoplasmic	1	46	0.93
Transmembrane Helix	47	68	0.87
Non-Cytoplasmic	69	87	0.84
Transmembrane Helix	88	107	0.90
Cytoplasmic	108	133	0.82
Transmembrane Helix	134	156	0.82
Non-Cytoplasmic	157	168	0.84
Transmembrane Helix	169	191	0.89
Cytoplasmic	192	256	0.97
Transmembrane Helix	257	277	0.93
Non-Cytoplasmic	278	296	0.86
Transmembrane Helix	297	316	0.92
Cytoplasmic	317	404	0.97
Transmembrane Helix	405	424	0.96
Non-Cytoplasmic	425	431	0.77
Transmembrane Helix	432	451	0.93
Cytoplasmic	452	478	0.99