YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|187035612, gi...
Protein type:	Transmembrane
Type Confidence:	0.60
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EMLEIIQLSP KTDNGYFVVK YIKKVLKSPV FWIVIVYTIF LAYSTHIEDP KEIPYPIAQI  60
   61 NFKTSRKYIS SNYAASSRLG NHLFELASVL SISRDLNRVP IFFIEDCYHE KMWEDTNNLI 120
  121 PGLMNQFCKY FQVPRAIRRT SFHEKCCTFD NPSVLKENKD EYLHLKGTHY QSWKYFSQMR 180
  181 NELLGFLKTP VNNFFYLPVS SESTFVTCVH IRRGDFLRVG FHVAGEHFIK SSMDFVQNQG 240
  241 RSRKHMATVF FGDDFSFMDS LRNRTVYNTQ DAFVSQNSPS DDLLYSKANC DVVIITAAHS 300
  301 TFGWWMGYLS KGNTVYYTDI KYTKDYILET GEFTSEDYYP PHWTPLKYAG SNNLTVTRSF 360
  361

Type	Start	End	Confidence
Cytoplasmic	1	27	0.56
Transmembrane Helix	28	47	0.54
Non-Cytoplasmic	48	360	0.98