YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7486906, gi\|3...
Protein type:	Transmembrane
Type Confidence:	0.93
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVDTVDKLGY FQAITGLEDA DLCTEILQAH GWDLELAISS FTSSDQDASS SAVDGGGNNR  60
   61 DHDHNNATVT PDYPPRGIVD DTELVMRDDG GGNRGPGVAW RIITLPISIV SGSLGLVSGA 120
  121 IGLGIWAAGG RGGGSESARL VSVSSAVGEA MEFVALFDRD YGSNNAFKID FVVEGFMDAL 180
  181 QRSRSSFKLL FVYLHSPDHP DTPVFCGGTL CNEAVVAFVN ENFVSWGGSI RSSEGFKMSN 240
  241 SLKASRFPFC AVVMPAANQR IALLQQVEGP KSPEEMLAIL QRIVEDSSPT LVTARVEAEE 300
  301 RRTNLRLREE QDAAYRAALE ADQAREQQRQ EEKERLEREA AEAERKLKEE EEARERAARE 360
  361 AEERQAARVR MRQEKALALG EEPEKGPDVT QVLVRFPNGE RKGRMFKSET KIQTLYDYVD 420
  421 SLGLLDTEEY SLITNFPRTV YGRDKESMSL KDAGLHPQAS LFIEIN

Type	Start	End	Confidence
Cytoplasmic	1	103	0.88
Transmembrane Helix	104	129	0.81
Non-Cytoplasmic	130	466	0.92