YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39590575, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	18	0.96
Transmembrane Helix	19	42	0.88
Non-Cytoplasmic	43	62	0.91
Transmembrane Helix	63	83	0.89
Cytoplasmic	84	93	0.79
Transmembrane Helix	94	114	0.95
Non-Cytoplasmic	115	119	0.74
Transmembrane Helix	120	141	0.91
Cytoplasmic	142	152	0.90
Transmembrane Helix	153	176	0.90
Non-Cytoplasmic	177	196	0.93
Transmembrane Helix	197	218	0.92
Cytoplasmic	219	288	0.98
Transmembrane Helix	289	310	0.54
Non-Cytoplasmic	311	325	0.56
Transmembrane Helix	326	349	0.90
Cytoplasmic	350	355	0.61
Transmembrane Helix	356	379	0.93
Non-Cytoplasmic	380	475	0.60
Transmembrane Helix	476	502	0.78
Cytoplasmic	503	513	0.45
Transmembrane Helix	514	537	0.82
Non-Cytoplasmic	538	543	0.44
Transmembrane Helix	544	565	0.91
Cytoplasmic	566	613	0.55

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VGVGGGSGQS RPASDPRIGW FVYMLAFSAV IGGFLFGYDT GIVSAAMLYV PDAAGIKPLD  60
   61 SVWQEIIVSV TPGVAAIGSL CSGPGSDFLG RKKIIIGASV TFAVGAVICA AAWTKIVLLI 120
  121 GRILLGAAIG FASMIVPIYV SEASPSHIRG KLVTGFQLMI TVGLVIANIV GGAFSYVDPF 180
  181 GWRSFLNTSN PSKNLPFRLM FAFAAVPAII QFVCFLFLPE SPRWLYEHGR TVEAREVLTR 240
  241 IYNGHTEWVD YEINEISFSY EEELRAKAEH AGNGPTIIRI LKTPHVRKAL IIGSLLQMFQ 300
  301 QLSGINTVMY YTGNIIRSAG VKNKHTTIWI SVGTSAINFI GTFIPIALVE RLGRRVLLLV 360
  361 SMIGVILFLI AMGVSFLLIN NDSSLTYPQN EYAATPNFNP SVKDAIKCMK YSNCDFCVTD 420
  421 EKCGFCENKA SKTGYCLPFP DSDSADFSAT GICQFSNLTG NGKTYEWEDS YCHTKFTVLP 480
  481 IIIMVFYLLS FSAGYAPLPW VLNAEFYPLW ARSTAVSIST AFNWIFNLIV SLTFLSLSQA 540
  541 ATKYGTFFIY CGCTIVALIF VFFFVPETKG YSIDEVEMLF MTKEEREKTQ KVLDESKEGK 600
  601 HRNSVALSYD TKF