YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39590766, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.93
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFWFDLFFP IEMLVVGLSG GVATGKSTVS SVFRAHGVPI IDADQIARQV VIPGTSTYKK  60
   61 LRKEFGDEYF DDEQGGVLRR DKLGKLIFNN PEKRKALNGI THPAIRWEMF KQFLTLLFTG 120
  121 TKYIVFDTPL LFESGYDKWI GTTIVVWCDF EKEVERMMKR DNIPRADAES RIHAQMDIEE 180
  181 KKKRAKIVLD NNGNIDELRE KVKEVIIQME KSWKPYIYRV IFGLILGVVP YYALKYIRS

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.65
Transmembrane Helix	8	25	0.66
Cytoplasmic	26	215	0.82
Transmembrane Helix	216	234	0.92
Non-Cytoplasmic	235	239	0.73