YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|157753056
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	27	0.99
Transmembrane Helix	28	50	0.92
Non-Cytoplasmic	51	57	0.75
Transmembrane Helix	58	80	0.87
Cytoplasmic	81	93	0.86
Transmembrane Helix	94	114	0.93
Non-Cytoplasmic	115	157	0.93
Transmembrane Helix	158	177	0.91
Cytoplasmic	178	184	0.69
Transmembrane Helix	185	207	0.90
Non-Cytoplasmic	208	224	0.85
Transmembrane Helix	225	247	0.83
Cytoplasmic	248	258	0.91
Transmembrane Helix	259	279	0.95
Non-Cytoplasmic	280	348	0.52
Transmembrane Helix	349	374	0.81
Cytoplasmic	375	392	0.51
Transmembrane Helix	393	416	0.80
Non-Cytoplasmic	417	418	0.38
Transmembrane Helix	419	437	0.60
Cytoplasmic	438	619	0.95
Transmembrane Helix	620	639	0.89
Non-Cytoplasmic	640	644	0.76
Transmembrane Helix	645	664	0.93
Cytoplasmic	665	678	0.88
Transmembrane Helix	679	699	0.94
Non-Cytoplasmic	700	704	0.85
Transmembrane Helix	705	724	0.95
Cytoplasmic	725	765	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSLLRKMLR TRRVDEQFLR HSEWARRLGI PLMVALAGIK SISMMLFIIL PFSLTQVAGP  60
   61 STVLALIFAF LIIFFTAAHL SELSCTMPKN CAQYHFAYAV VGELPAFVIA WISLVDYVAQ 120
  121 AGLFCKAWAD HFNLLFRGLP AKSLTFDVFS PDSSILSPQV DLLTVLSAII TLCLLLCSLR 180
  181 VVGTICVSLL AVTLLIAASC TMVSFFHSDP ENWIKAEFFH YGYKGVLYSI CALCACYTGI 240
  241 ESTSCLLEET KNPRKRISGV LSFLVLVLTT IFFILAITFS LSTNVTALSE GIMIPEVFSA 300
  301 INIPAAKSTT KYWVRRFPMI STDTTATSSP ISSSAFRSYY EQGFIRMRYM LSVCSVCALS 360
  361 GGVLASFLPA TRVIAALCHD RLVPYARDTS TKSPYFAVLL CTFLVALCSM IQKTLLLNFV 420
  421 IFMAPAKLVI TILLVYIQHY YPEQIGIPEE TSGYKSIGKK RTRVHIDDGV SVDDSISLMP 480
  481 QRSKRADDDE SEVSHSTFDT TAFLYMKATK METERLQRRL EKEDNENEER QPVLAKSVSQ 540
  541 YHSMDQQVQK NRKPSIKKHE HNCVAEQCGA DNDDDYNSQE VHLFANEEPE LPFFSTFSSS 600
  601 APRPPSPDVS FSNFHKSQRL LFLFCFMTSA FSTFLRNFAM PTTTCWLLSA GFVIIILVFS 660
  661 VNINRLQTND YLYKKEAKVT LFPTASLFAL FLLLVSFFGS VPVNTLLHLV IIFFSGIISY 720
  721 FLYGYRHSKH RKTACLVIEN RYSDTVDEDQ YCPIVGLDTS SSFDA