YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|187021309, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LIFLIPESIE YCPFKKAVVD DILLIPTDDY LSVEQDESAE VCEIEIHSSS GDLLLVSITN  60
   61 FLMFSHRRPR NPNDIIVRNN DMQFILDTKP KGYQLMKTPI WLIIPMNLNF RSIFLFSNPR 120
  121 DCTSENTMRC PEYSLCYNCS KYCFSTNLEC DGLDTCGEDE SSCTFINPRT PHTSYRYGRD 180
  181 ALSSSQIMLI GFFALNGSFI VFFLILSLCS AGIFYRCPWY AKNSKASRHT FIRYLREAIP 240
  241 PALAAPNPPL DQGEQPKIED DKMLTVPATP PRHTRHRHSI LSRINFQPAP ALSEIEPEVE 300
  301 DREQSPQESI CEPPAHQPEV FLRRQSLPFG LNAVPLPADL NSKILEKKTR FGSRAMSFQH 360
  361

Type	Start	End	Confidence
Non-Cytoplasmic	1	188	0.66
Transmembrane Helix	189	215	0.82
Cytoplasmic	216	360	0.74