YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39592502, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	218	0.92
Transmembrane Helix	219	243	0.82
Non-Cytoplasmic	244	257	0.86
Transmembrane Helix	258	280	0.88
Cytoplasmic	281	286	0.83
Transmembrane Helix	287	307	0.92
Non-Cytoplasmic	308	316	0.69
Transmembrane Helix	317	338	0.86
Cytoplasmic	339	346	0.80
Transmembrane Helix	347	369	0.88
Non-Cytoplasmic	370	377	0.78
Transmembrane Helix	378	400	0.92
Cytoplasmic	401	420	0.94
Transmembrane Helix	421	441	0.94
Non-Cytoplasmic	442	458	0.89
Transmembrane Helix	459	480	0.93
Cytoplasmic	481	488	0.85
Transmembrane Helix	489	511	0.90
Non-Cytoplasmic	512	518	0.91
Transmembrane Helix	519	541	0.91
Cytoplasmic	542	556	0.91
Transmembrane Helix	557	578	0.83
Non-Cytoplasmic	579	605	0.60

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGTDLPYTF DQDPLEMDTS SEVTGIVDYG GTSNARKSGS VGFAKKDKKV VSIGAVDNRT  60
   61 HAQLLKTRNY STSNAPETEL TPLLHPSASL PTVVGYDGFL EDYQTSHAIT RSEVLTSWTS 120
  121 TKKNFKIVSI LSFLKTFFFR PFIISPFMPI STQISVDGPR PTVLNTKVNY QSTADTLSIK 180
  181 ESEEGSESDE ESEVSDQEQS VPFLKSAIRT VSALSSRQIL SISMLSLANL CSTVAFSCIA 240
  241 PFYPAEAKLK NLSETQTGIV FGIFEFTMFI ISPIFGKYII WIGARRMFIV GIAVTGLTAI 300
  301 LFGFLNLPPG SLFFWFSVLV RILEAVGDAA FVTSSFAIAA KSFPKNVAFV VGILETFAGL 360
  361 GYTAGPVIGG FFYDIGGFQL PFLVLGIVLL AASVLAFFLI ENSKDDQSSP EDKGMMEILK 420
  421 LPPIWLPIFS VVACAISLSF LDPTLSNHLE SFKLTPTEIG LMFLLCGGFY TAMCPIFGAV 480
  481 MDRLHNGNTL LLFGSIATLL SMFFIGPTPL LSGYVEKDLW VIGISLAVLG LAASALYIPC 540
  541 FQMCLDEVKE QGFEDNFHTY GCVSGIFQAA FGFGSFIGPT FGSVVVERVG FRWTTTMIAF 600
  601 LHIIL