YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|187031596, gi...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.94
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLRLCRFLT PSLSSSSASG RCAKLFLLLL SANSILIGFV LGQLPDELDP FLEKLFEFEE  60
   61 CEDFLGSTDY TNIATTKCDP HTCDFPRQIC ARPAAKFQDS SANTCRTIPL ECITAANGGV 120
  121 APGPSIRPTP SPFMPQPSIP NGISPMIPSP SAVSVTPSPT DPLAICKMGV PNGRFCGFRP 180
  181 MFTYNKETLQ CDEFWFPGCR TAETNANLFE DYQQCQKVAE MCKPTPPPTL APFRPRPHTT 240
  241 RRPQPPPSPP PPPPPSPFVD AFKSFGGNSQ AGQGALGAIG MFTGSGLGPT GQGPLGNFAP 300
  301 NPNAGAPPPA AGGAGGQDGQ DLGLFGLIQQ GIMGAQAAGQ GGKPGKEATA KAAGQILQQF 360
  361 TGFDLGGIGN NFGGLFGR

Type	Start	End	Confidence
Signal Peptide	1	42	0.90
N-region	1	33
H-region	34	39
C-region	40	42
Cleavage Site	42	43
Non-Cytoplasmic	43	378	0.99