YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|157755685
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.93
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	16	0.92
N-region	1	7
H-region	8	13
C-region	14	16
Cleavage Site	16	17
Non-Cytoplasmic	17	36	0.99
Transmembrane Helix	37	57	0.94
Cytoplasmic	58	65	0.86
Transmembrane Helix	66	86	0.88
Non-Cytoplasmic	87	97	0.72
Transmembrane Helix	98	116	0.87
Cytoplasmic	117	126	0.76
Transmembrane Helix	127	150	0.89
Non-Cytoplasmic	151	160	0.75
Transmembrane Helix	161	183	0.86
Cytoplasmic	184	190	0.84
Transmembrane Helix	191	214	0.79
Non-Cytoplasmic	215	232	0.80
Transmembrane Helix	233	255	0.91
Cytoplasmic	256	262	0.74
Transmembrane Helix	263	282	0.82
Non-Cytoplasmic	283	286	0.71
Transmembrane Helix	287	306	0.88
Cytoplasmic	307	323	0.83
Transmembrane Helix	324	342	0.90
Non-Cytoplasmic	343	350	0.72
Transmembrane Helix	351	375	0.88
Cytoplasmic	376	392	0.85
Transmembrane Helix	393	412	0.89
Non-Cytoplasmic	413	417	0.74
Transmembrane Helix	418	441	0.85
Cytoplasmic	442	666	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSLLFVFFL ICYATADKIE ESNSDGYQLF TWKWDDVHHV YVITVWLLIA SLAKILFNLM  60
   61 KPISKWLPDS SLLIIVGLAL GWVLHQTTLS GATLDSHTFF LYLLPPIIFD AGYFMPNRAL 120
  121 FENFDSVLVF SVFGTIWNTF AIGGSLLLMA QYDLFTMSFT TFEILVFSAL ISAVDPVAVI 180
  181 AVFEEIHVNE FLFINVFGEA LFNDGVTVVL YQMFKSFALI GSENLSVLDY ATGGLSFFVV 240
  241 ALGGAAVGVI FAIAASLTTK YTYDVRILAP VFIFVLPYMA YLTAEMVSLS SIIAIAICGM 300
  301 LMKQYIKGNI TQAAANSVKY FTKMLAQCSE TVIFMFLGLS TISSQHHFDL WFICATLFFC 360
  361 LIYRAIGIVV QCYILNRFRA KKFEVVDQFI MSYGGLRGAI AYGLVVSIPA SITAKPMFIT 420
  421 ATIAVIYFTV FLQGITIKPL VNLLKVKRKE ERDPTMVESV YNKYLDYMMS GVEDIAGQKG 480
  481 HYTFIENFER FNAKVIKPVL MRHQKRESFD ASSIVRAYEK ITLEDAIKLA KVKNTIQNKR 540
  541 LERIKSENKV APILPDKISN QTTMTPKDLQ LKKFMESGEN IDSLYTLFSD LLDRKLHEMN 600
  601 TTPAQKKEVE GEDDIQDDYM AEVGSRSNLS AMFRSAEQLP SEAAFHRGRR QSTGDLNATK 660
  661 RADFDV