YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PGAM5_CAEBR
Protein type:	Globular with Signal Peptide
Type Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSKILMYGL PSAAVAVGTA LLNEDNRNTI FRKAFAFTQN HTPKSFDEHF PRGEWDKNWD  60
   61 FRDPTSLVDK SKWEKADEVG KKKLLEECKA TASRNIFLIR HGQYHLDQLL GKRLANSDIK 120
  121 FTNMTMSTMT RATETANIIL KHLPGDLPKS SSSLIEEGPP YPPVPDHKTW RPLDPEFYTE 180
  181 AARIESAFRK LIHRAPPSQK EDSYELIVCH ANVIRYFICR ALQFPPEGWL RMSLGNCSIT 240
  241 WLVIRPKGHV SIRSVGDIGH LTPNKISFT

Type	Start	End	Confidence
Signal Peptide	1	20	0.81
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	269	0.98