YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39596256, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.95
Transmembrane Helix	21	42	0.91
Non-Cytoplasmic	43	60	0.89
Transmembrane Helix	61	82	0.92
Cytoplasmic	83	90	0.78
Transmembrane Helix	91	112	0.91
Non-Cytoplasmic	113	117	0.70
Transmembrane Helix	118	142	0.87
Cytoplasmic	143	148	0.89
Transmembrane Helix	149	173	0.87
Non-Cytoplasmic	174	180	0.77
Transmembrane Helix	181	200	0.94
Cytoplasmic	201	382	0.98
Transmembrane Helix	383	403	0.75
Non-Cytoplasmic	404	426	0.70
Transmembrane Helix	427	446	0.80
Cytoplasmic	447	464	0.92
Transmembrane Helix	465	487	0.91
Non-Cytoplasmic	488	494	0.78
Transmembrane Helix	495	517	0.90
Cytoplasmic	518	525	0.77
Transmembrane Helix	526	548	0.86
Non-Cytoplasmic	549	554	0.85
Transmembrane Helix	555	578	0.91
Cytoplasmic	579	592	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTGAPVSSGG GKLVPLPPDG GWGWVVVIGS FFVHVFADGF VYSFGVLVET LMEEFQANNT  60
   61 MAALIISLLT GLTLGSGPLA SAVCNKYGCR ITTITGAGVA FVGCAISYFA TAMWHIVISV 120
  121 GVIMGVGFGL MYCPAIVIVT MYFENKRSLA TGIAVAGAGV GTVLFAPINA FLITNFGWRS 180
  181 VFLAFLFVLV LCALCGATFA PLEFALVPDE EEEENNEVFE EDGKKVTANE AHGEKATLLT 240
  241 PPTMIERSMS QSSGVQRVGE KIRPASSVGA VDVESQPRSR RGTVGERDSG YLNRKDVFYT 300
  301 GSISNVAEFR EDPDKYRSTG SLHGRHTTVG SIPAHSTGKL DDVREGSEED SKALDVSEKT 360
  361 DGSDNVEGKN MFKTISNMLS LDLLLEPTFL LFAISNLLTS VGFNSPLYFL PLHSTKIGLD 420
  421 AIQGSKVLSA FGISNTIGRV VFGVVADHKL PLPGGLGEDT ARNRLWMYNI SLTICGLLTT 480
  481 FCYKFVGFMP LATYSALFGF SIASYICLTS VILVDLLGLD KLTNAFGLLL LWQGIGTVFG 540
  541 PPVSGYLADM SGSYTLSFVF CGINLLVSGL MLFGIPILQS RRAKAKAAAI KN