YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39596754, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	73	0.96
Transmembrane Helix	74	101	0.81
Non-Cytoplasmic	102	109	0.83
Transmembrane Helix	110	132	0.89
Cytoplasmic	133	140	0.78
Transmembrane Helix	141	160	0.94
Non-Cytoplasmic	161	168	0.69
Transmembrane Helix	169	193	0.89
Cytoplasmic	194	201	0.81
Transmembrane Helix	202	224	0.89
Non-Cytoplasmic	225	232	0.76
Transmembrane Helix	233	254	0.90
Cytoplasmic	255	547	0.98
Transmembrane Helix	548	569	0.87
Non-Cytoplasmic	570	585	0.90
Transmembrane Helix	586	606	0.92
Cytoplasmic	607	614	0.94
Transmembrane Helix	615	636	0.92
Non-Cytoplasmic	637	641	0.72
Transmembrane Helix	642	664	0.82
Cytoplasmic	665	675	0.63
Transmembrane Helix	676	697	0.86
Non-Cytoplasmic	698	705	0.75
Transmembrane Helix	706	726	0.94
Cytoplasmic	727	776	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAARRRPSMR TRMKAEDVSC WVEHNQQQQP RSPRDEQHRV QFVTPATPTR AAPDEDSEDE  60
   61 LKENPIPTDG GFGWFVVFAS FLMHVVCDGA SFCFGIVLVM IQRNYNAGRV ASMFTASLFL 120
  121 SLPLLLAPIA GFTSDRLGCR MAIIIGGSIC TVSCVLSMFC PNMWLFTPIF GFGCGLGMAF 180
  181 IYNAAIVIVT YYFSAKRGTA TSLAVAGTGG GTFVFPGLLT LSVYSLTLVF TDLQSALTCF 240
  241 AVAYSIVVVL GLLIRDVEWE SDTCDFKLKK FDQNVRTLLE DQESSAKIVK DTLLRRANSL 300
  301 PNLNAIRVDV GSIQSVCEAG RVEGTAEMPT RSKSMALFEN KNQLPVIQEY SMLNSNLANL 360
  361 EHLDLELANS PCTTVRAQRR RVISKVSMSV DQINEMDDED FKVNFFDSSS GSAETESSSD 420
  421 DSEMSNDGDS SSSELSEKQI DEPVAQLINR NLTSVVTRAA SSAPTSARLV RSSLAPGSSN 480
  481 VSGGRVLASN AIQSRFTSNL LTMGKIPSAP MLVARKKRKI LSRTQKSISR RIAEEKVCYK 540
  541 IILRSYPFRY IALSVFCLYF ILDVPYVCVY DYGIEHLGLS ETTSKSIYSA IGFCNCLSTI 600
  601 VFGKFADHPL TKDKIHWIYV FSMVVVSITL FAATFVTTAT EIIVSGGLFG VFITSNYVLQ 660
  661 SLIIANCFNG LSIFQSAYSM ISMLEGVASF IGPPIFAQLR EMTGSYSVVF FTGGIFSLLS 720
  721 GFFLYLSARE MQKEDDEIAR IAAERTSSSA EEVPNGTTTR ANGEGTGTET ETLLDV