YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|1749590, gi\|1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.92
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LQPSRRPWKE SITTAVRWVW HAFRILLITR GVPYFSTAWF QFYLKLFSQK DNVSSSDLTR  60
   61 WFFFYTLLYP WIALVSAFVA ETMTLCCIVT IFYDKNVNRQ WKQYILTSVS NMDKGNPAGG 120
  121 SQSTNVTTFR RFSQSSYPRR SNYRRRISTS SKSLYELSPS KFKSIPITSN PPPMLNLSKG 180
  181 STSVEPTFCE TNASVALSTV TSTPVFSTDS SPLSSRTREN LLSLIPSAVS SPTKANTNKS 240
  241 HQRSFSIPKA TKDSQTPSEN SAATLKQAAI DAYSQIPVIP FFLPSDKLIM LVESEYRNKH 300
  301 IFYSLLNSFT MVMFPELRHT K

Type	Start	End	Confidence
Cytoplasmic	1	19	0.92
Transmembrane Helix	20	38	0.92
Non-Cytoplasmic	39	70	0.87
Transmembrane Helix	71	93	0.94
Cytoplasmic	94	321	0.96