YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|157751940
Protein type:	Transmembrane
Type Confidence:	0.93
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRSKIRYQLL DQAGAPRNFR LLWLFLFAVA CFVAYFLLSS PSTNGVFNPL KPDARNPITY  60
   61 EQVMKDLRNE IDQRNVIINE LQQDLEKMEL KNDFKNLYRR RPETDHVDCG RILSGDKVYL 120
  121 ESVSGKNRIK IVENDQLDMS CAAIMNRILP PGSNLKPLKN GVAFARIVYA DYEMIEKQIQ 180
  181 MSYHPQNSFC FAIDKKAPPQ FHERLRVMAA CLPNVLLLPD EESVDSAGHN INSAHYNCMR 240
  241 VLINKPGWNY VILLQNHDLI TKSVYELEQV YEWLGGANDV EITPEAGRLD NKFKWDPKSL 300
  301 KMFRNATGID EVILNGKMKF AKGAAQGSLS RAAVDWMVRT ADLTTYIDQW NKGGFGVDEQ 360
  361 FIQSFQVSSD LGMPGHFTDE CLKQGKKADF VSRMSQWKYG DSDKSFDYAI VECSAELLHN 420
  421 RTFLGQEDHK LEEDYYKNMI NVLYHKNHLD PNFKLECTPS YTKWAARDYP L

Type	Start	End	Confidence
Cytoplasmic	1	20	0.88
Transmembrane Helix	21	39	0.90
Non-Cytoplasmic	40	471	0.99