YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|45385976
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATWVLSECT LKPLPKFYSH PRNALPSKPS TLRPFPNVRS TNLLGFRGAK WSLNVSAPLR  60
   61 VPSVDGEDNG KVSTNGVGDG GEFDPGAPPP FKLGDIRAAI PKHCWVKDPW KSMSYVVRDV 120
  121 AVVFGMAALA SYLNNWAVWP LYWFAQGTMF WALFVLGHDC GHGSFSNNPK LNSVVGHLLH 180
  181 SSILVPYHGW RISHRTHHQN HGHVENDESW HPLPEKIYKS LDKMTQIFRF TLPFPMLAYP 240
  241 FYLWNRSPGK SGSHYDPNSE LFLPNERKDI ITSTACWAAM AALLVGLSFT MGPVQVLKLY 300
  301 GVPYWMFVLW LDLVTYLHHH GHEDKLPWYR GKEWSYLRGG LTTIDRDYGW INNIHHDIGT 360
  361 HVIHHLFPQI PHYNLIEATE AAKPVLGKYY REPKKSGPLP LHLLGVLVRS FKRDHYVSDT 420
  421 GDVVYYQTDK ELAGSAVSE

Type	Start	End	Confidence
Cytoplasmic	1	114	0.99
Transmembrane Helix	115	133	0.87
Non-Cytoplasmic	134	141	0.58
Transmembrane Helix	142	161	0.71
Cytoplasmic	162	269	0.74
Transmembrane Helix	270	292	0.85
Non-Cytoplasmic	293	300	0.61
Transmembrane Helix	301	320	0.79
Cytoplasmic	321	439	0.84