YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|187027843, gi...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCARSGTEDR RAMRQVARRT LLENSPCESP GCLIVYSLQM TVSLALNHAR NFLARHMLLT  60
   61 NIGTSCAQIG TADIIQQHIN GDVDRDGWDW RRTCRMAAIG LVMAPSLHCF YRVLDTRKFK 120
  121 GSKNCRVLKK LAWDTSFIPF FSCTFITVGA IYEGKSPKAA FAEYRRKMWH IWKVDFTLWP 180
  181 PAQLINFYFL PPALRVVYVN LVSLLYNCIM SYIKNNELHH PH

Type	Start	End	Confidence
Cytoplasmic	1	56	0.76
Transmembrane Helix	57	72	0.59
Non-Cytoplasmic	73	92	0.76
Transmembrane Helix	93	114	0.76
Cytoplasmic	115	130	0.89
Transmembrane Helix	131	152	0.85
Non-Cytoplasmic	153	187	0.85
Transmembrane Helix	188	210	0.71
Cytoplasmic	211	222	0.78