YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39598224, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVPSPPPTFC GRVVHHLKSD DDFRTATDAF MILFAVVGSV SAATSSYLLG LVAIAIVMPI  60
   61 AYLIGRKRPN KAILLPGAFL GCAVAVNLAY TVSHEGETWE HLTRYFVFLF LFHFTEFVFT 120
  121 ALTNRRSLRP DSFLLNHSVG YWLAAGISWV EFGIEAYFFP GIKSYPVLWI GTIGCIIGEI 180
  181 CRKLAMIHAG LGFTHRLAMK KRVDHRLVKD GIYAYMRHPG YFGWFVWAVS TQIILCNPIC 240
  241 FVVYAYVTWH FFASRIYDEE RDLIAFFGDA YVEYQREVWI GVPFVSGYQR P

Type	Start	End	Confidence
Non-Cytoplasmic	1	31	0.78
Transmembrane Helix	32	64	0.77
Cytoplasmic	65	71	0.90
Transmembrane Helix	72	93	0.93
Non-Cytoplasmic	94	101	0.89
Transmembrane Helix	102	123	0.91
Cytoplasmic	124	132	0.91
Transmembrane Helix	133	159	0.76
Non-Cytoplasmic	160	166	0.76
Transmembrane Helix	167	186	0.71
Cytoplasmic	187	222	0.69
Transmembrane Helix	223	247	0.87
Non-Cytoplasmic	248	291	0.69