YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|2384669
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	19	0.83
Transmembrane Helix	20	38	0.62
Non-Cytoplasmic	39	64	0.72
Transmembrane Helix	65	87	0.83
Cytoplasmic	88	154	0.87
Transmembrane Helix	155	177	0.87
Non-Cytoplasmic	178	192	0.82
Transmembrane Helix	193	212	0.90
Cytoplasmic	213	219	0.68
Transmembrane Helix	220	241	0.90
Non-Cytoplasmic	242	266	0.77
Transmembrane Helix	267	289	0.82
Cytoplasmic	290	298	0.65
Transmembrane Helix	299	322	0.81
Non-Cytoplasmic	323	341	0.83
Transmembrane Helix	342	372	0.76
Cytoplasmic	373	392	0.83
Transmembrane Helix	393	413	0.90
Non-Cytoplasmic	414	420	0.82
Transmembrane Helix	421	442	0.93
Cytoplasmic	443	449	0.78
Transmembrane Helix	450	471	0.91
Non-Cytoplasmic	472	477	0.87
Transmembrane Helix	478	498	0.92
Cytoplasmic	499	523	0.83
Transmembrane Helix	524	551	0.57
Non-Cytoplasmic	552	712	0.50

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNQSPSLIEQ GISQQHLKTL SCANVLTLAY QSLGVIYGDL STSPLYVYKT TFSGKLSLHE  60
   61 DDEEIFGVFS FIFWTFTLIA LFKYVFIVLS ADDNGEGGTL ALYSLLCRYA KLSILPNHQE 120
  121 MDEKLSTYAT GSPGETRQSA AVKSFFEKHP KSQKCLLLFV LLGTCMAIGD SVLTPTISVP 180
  181 SAVSGVKLKI PNLHENYVVI IACIILVAIF SVQRYGTHRV AFIFAPISTA WLLSISSIGV 240
  241 YNTIKWNPRI VSALSPVYMY KFLRSTGVEG WVSLGGVVLS ITGVETMFAD LGHFSSLSIK 300
  301 VAFSFFVYPC LILAYMGEVA FLSKHHEDIQ QSFYKAIPEP VFWPVFIVAT FAAVVGSQAV 360
  361 ISATFSIISQ CCALDCFPRV KIIHTSSKIH GQIYIPEVNW MLMCLCLAVT IGLRDTNMMG 420
  421 HAYGLAVTSV MLVTTCLMTL VMTIVWKQRI ITVLAFVVFF GSIELLYFSS CVYKVPEGGW 480
  481 IPILLSLTFM AVMYIWNYGT TKKHEFDVEN KVSMDRIVSL GPSIGMVRVP GIGLVYSNLV 540
  541 TGVPAVFGHF VTNLPAFHKI LVFVCVKSVQ VPYVGEEERF VISRVGPKEY GMFRSVVRYG 600
  601 YRDVPREMYD FESRLVSAIV EFVGTEPGLE EEEMSSVRRK KEECMEIMEA KEAGVAYILG 660
  661 HSYAKAKQSS SVLKKLAVNV VFAFMSTNCR GTDVVLNVPH TSLLEVGMVY YV