YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|1407625
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.86
Topology Confidence: 0.74
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPTWGPGMV SVVGPMGLLV VLLVGGCAAE EPPRFIKEPK DQIGVSGRVA SFVCQATGDP  60
   61 KPRVTWNKKG KKVNSQRFET IEFDESAGAV LRIQPLRTPR DENVYECVAQ NSVGEITVHA 120
  121 KLTVLREDQL PSGFPNIDMG PQLKVVERTR TATMLCAASG NPDPEITWFK DFLPVDPSAS 180
  181 NGRIKQLRSG ALQIESSEET DQGKYECVAT NSAGVRYSSP ANLYVRVRRV APRFSILPMS 240
  241 HEIMPGGNVN ITCVAVGSPM PYVKWMQGAE DLTPEDDMPV GRNVLELTDV KDSANYHPCV 300
  301 AMSSLGVIEA VAQITVKSLP KAPGTPMVTE NTATSITITW DSGNPDPVSY YVIEYKSKSQ 360
  361 DGPYQIKEDI TTTRYSIGGL SPNSEYEIWV SAVNSIGQGP PSESVVTRTG EQAPARPPRN 420
  421 VQARMLSATT MIVQWEEPVE PNGLIRGYRV YYTMEPEHPV GNWQKHNVDD SLLTTVGSLL 480
  481 EDETYTVRVL AFTSVGDGPL SDPIQVKTQQ GVPGQPMNLR AEARSETSIT LSWSPPRQES 540
  541 IIKYELLFRE GDHGREVGRT FDPTTSYVVE DLKPNTEYAF RLAARSPQGL GAFTPVVRQR 600
  601 TLQSKPSAPP QDVKCVSVRS TAILVSWRPP PPETHNGALV GYSVRYRPLG SEDPEPKEVN 660
  661 GIPPTTTQIL LEALEKWTQY RITTVAHTEV GPGPESSPVV VRTDEDVPSA PPRKVEAEAL 720
  721 NATAIRVLWR SPAPGRQHGQ IRGYQVHYVR MERREARGRR SIKDVMLADA QEMVITNLQP 780
  781 ETAYSITVAA YTMKGDGARS KPKVVVTKGA VLGRPTLSVQ QTPEGSLLAR WEPPAGTAED 840
  841 QVLGYRLQFG REDSTPLATL EFPPSEDRYT ASGVHKGATY VFRLAARSPG GLGEEAAEVL 900
  901 SIPEDTPRGH PQILEAAGNA SAGTVLLRWL PPVPAERNGA IVKYTVAVRE AGALGPARET 960
  961 ELPAGRLSRA RRTLTLQGLK PDTAYDLQVR AHTRRGPGPF SPPVRYRTFL RDQVSPKNFK1020
 1021 VKMIMKTSVL LSWEFPDNYN SPTPYKIQYN GLTLDVDGRT TKKLITHLKP HTFYNFVLTN1080
 1081 RGSSLGGLQQ TVTAWTAFNL LNGKPSVAPK PDADGFIMVY LPDGQSPVPV QSYFIVMVPL1140
 1141 RKSRGGQFLT PLGSPEDMDL EELIQDISRL QRRSLRHSRQ LEVPRPYIAA RFSVLPPTFH1200
 1201 PGDQKQYGGF DNRGLEPGHR YVLFVLAVLQ KSEPTFAASP FSDPFQLDNP DPQPIVDGEE1260
 1261 GLIWVIGPVL AVVFIICIVI AILLYKNKPD SKRKDSEPRT KCLLNNADLA PHHPKDPVEM1320
 1321 RRINFQTPGM LSHPPIPIAD MAEHTERLKA NDSLKLSQEY ESIDPGQQFT WEHSNLEVNK1380
 1381 PKNRYANVIA YDHSRVILQP IEGIMGSDYI NANYVDGYRR QNAYIATQGP LPETFGDFWR1440
 1441 MVWEQRSATI VMMTRLEEKS RIKCDQYWPN RGTETYGFIQ VTLLDTIELA TFCVRTFSLH1500
 1501 KNGSSEKREV RQFQFTAWPD HGVPEYPTPF LAFLRRVKTC NPPDAGPIVV HCSAGVGRTG1560
 1561 CFIVIDAMLE RIKPEKTVDV YGHVTLMRSQ RNYMVQTEDQ YSFIHEALLE AVGCGNTEVP1620
 1621 ARSLYAYIQK LAQVEPGEHV TGMELEFKRL ANSKAHTSRF ISANLPCKKF KNRLVNIMPY1680
 1681 ESTRVCLQPI RGVEGSDYIN ASFIDGYRQQ KAYIATQGPL AETTEDFWRM LWENNSTIVV1740
 1741 MLTKLREMGR EKCHQYWPAE RSARYQYFVV DPMAEYNMPQ YILREFKVTD ARDGQSRTVR1800
 1801 QFQFTDWPEQ GVPKSGEGFI DFIGQVHKTK EQFGQDGPIS VHCSAGVGRT GVFITLSIVL1860
 1861 ERMRYEGVVD IFQTVKMLRT QRPAMVQTED EYQFCYQAAL EYLGSFDHYA T

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle