YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|8895492
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESLFPAPYW EVLYGSHFQG NLSLLNETVP HHLLLNASHS AFLPLGLKVT IVGLYLAVCI  60
   61 GGLLGNCLVM HTKMKTATNI YIFNLALADT LVLLTLPFQG TDILLGFWPF GNALCKTVIA 120
  121 IDYYNMFTST FTLTAMSVDR YVAICHPIRA LDVRTSSKAQ AVNVAIWALA SVVGVPVAIM 180
  181 GSAQVEDEEI ECLVEIPAPQ DYWGPVFAIC IFLFSFIIPV LIISVCYSLM IRRLRGVRLL 240
  241 SGSREKDRNL RRITRLVLVV VAVFVGCWTP VQVFVLVQGL GVQPGSETAV AILRFCTALG 300
  301 YVNSCLNPIL YAFLDENFKA CFRKFCCASS LHREMQVSDR VRSIAKDVGL GCKTSETVPR 360
  361 PA

Type	Start	End	Confidence
Non-Cytoplasmic	1	48	0.78
Transmembrane Helix	49	70	0.89
Cytoplasmic	71	79	0.83
Transmembrane Helix	80	100	0.90
Non-Cytoplasmic	101	120	0.77
Transmembrane Helix	121	143	0.71
Cytoplasmic	144	160	0.87
Transmembrane Helix	161	180	0.91
Non-Cytoplasmic	181	205	0.89
Transmembrane Helix	206	231	0.90
Cytoplasmic	232	252	0.96
Transmembrane Helix	253	274	0.92
Non-Cytoplasmic	275	290	0.84
Transmembrane Helix	291	314	0.71
Cytoplasmic	315	362	0.79