YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|23127196
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQNQSRDGEH PSNSILSNTA DTKYHNQAPW KKAAASLSLV LLGSGMTLAG GYMAGHSQQV  60
   61 SESASNLAAS RVNAAPPLSA ATDPNFVTQV VQKVGPAVVR IDSSRTVKSQ IPNEFNDPFF 120
  121 QRFFGSQMPE QQNRVERGTG SGFIISADGR ILTNAHVVDG ADTVTVTLKD GRSFKGKVLG 180
  181 KDELTDVAVI KIQADNLPLV ALGNSDQLQP GEWAIAIGNP LGLDNTVTTG IISATGRSSN 240
  241 LIGAADKRVE YIQTDAAINP GNSGGPLLNS RGQVIAMNTA IIQGAQGLGF AIPINTAQRI 300
  301 SSQIIATGKV EHPYLGIQMV GLTPQIKQNI NSDPNSGLSV DEDKGVLVVK VVPNSPAAKA 360
  361 GIRAGDVIQK LGGQAVTDAN SVQKVVENSQ IGGDLRMELR RNGQNLNIAV QPGAFPTQVQ 420
  421

Type	Start	End	Confidence
Cytoplasmic	1	32	0.94
Transmembrane Helix	33	55	0.86
Non-Cytoplasmic	56	420	0.98