YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|186685413, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIGFLRQAL NALQKQSRSR TSYRVNQWFK WLSPGLSVKR WLLISIGGVL LASLGLAIWI  60
   61 KLTPIFWMIE LFRGFLGVIT NILPNYISGP LVLLGGLLLV LWGQTRTVGS ITKVLRAEGG 120
  121 EELIDVLLAH HRLYRGPKIV VIGGGTGLST LLRGLKTYSA NITAIVTVAD DGGSSGRLRQ 180
  181 EFGVLPPGDI RNCLAALADE EKLLTELFQY RFRAGDGLTG HSFGNLFLTA MSDITGDLEQ 240
  241 AVAASSKVLA VRGQVLPATL SDVRLWAELT DGRRIEGESS IPKAGGKIVK IGCIPDNPPA 300
  301 VPAAIKAIKE ADYIIIGPGS LYTSLIPNLL VPEIADAIAQ TDAPRIYICN IMTQPGETEG 360
  361 YTVADHIRAI DAACGERRLF DAVLIHKKSP SEQSLIRYAE QNSHPVFLDR EAVTLLGRRI 420
  421 VAANVLYEDE TGFVRHNPQK LAQVLLRWYG RGHYGKRRNI TS

Type	Start	End	Confidence
Cytoplasmic	1	40	0.84
Transmembrane Helix	41	62	0.93
Non-Cytoplasmic	63	81	0.77
Transmembrane Helix	82	103	0.90
Cytoplasmic	104	462	0.59