YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57163875, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	44	0.44
Transmembrane Helix	45	67	0.87
Cytoplasmic	68	87	0.45
Transmembrane Helix	88	108	0.83
Non-Cytoplasmic	109	119	0.61
Transmembrane Helix	120	142	0.89
Cytoplasmic	143	238	0.76
Transmembrane Helix	239	260	0.86
Non-Cytoplasmic	261	279	0.73
Transmembrane Helix	280	303	0.88
Cytoplasmic	304	312	0.77
Transmembrane Helix	313	337	0.88
Non-Cytoplasmic	338	350	0.67
Transmembrane Helix	351	372	0.86
Cytoplasmic	373	387	0.72
Transmembrane Helix	388	413	0.67
Non-Cytoplasmic	414	431	0.58
Transmembrane Helix	432	457	0.77
Cytoplasmic	458	574	0.73

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASTEGANNM PKQVEVRMHD SHLSSEEPKH RPLGLRLCDK LGKNLLLTLT VFGVILGAVC  60
   61 GGLLRLASPL HPDVVMLIAF PGDILMRMLK MLILPLIISS LITGLSGLDA KASGRLGTRA 120
  121 MVYYMSTTVI AAVLGVILVL AIHPGNPKLK KQLGPGKKND EVSSLDAFLD LIRNLFPENL 180
  181 VQACFQQIQT VTKKVLVAPP SDEEGNATNA VISLLNETVT EAPEEAKVVI KKGLEFKDGM 240
  241 NVLGLIGFFI AFGIAMGKMG EQAKLMVEFF NILNEIVMKL VIMIMWYSPL GIACLICGKI 300
  301 IAIKDLEVVA RQLGMYMVTV IVGLIIHGGI FLPLIYFLVT RKNPFSFFAG IFQAWITALG 360
  361 TASSAGTLPV TFRCLEENLG IDKRVTRFVL PVGATINMDG TALYEAVAAI FIAQMNGVIL 420
  421 DGGQIVTVSL TATLASVGAA SIPSAGLVTM LLILTAVGLP TEDISLLVAV DWLLDRMRTS 480
  481 VNVVGDSFGA GIVYHLSKSE LDTIDSQHRV HEDIEMTKTQ SIYDDMKNHR ESNSNQCVYA 540
  541 AHNSVIVDEC KVTLAANGKS ADGGVEEEPW KREK