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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|27803061
Protein type: Transmembrane
Type Confidence: 0.63
Topology Confidence: 0.29
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTGVGAFPQT PVAPRVGRAR PTPFNNNLPP TLQHQPRRPP ANPNPLPVAP QAGGAPPTAN  60
   61 PPVIPLNILD APTQRLYAVA VYAGLLAWKL YDWAGVVEED TESLWLFLKW VAIDCAFLFG 120
  121 LPELRIPWLE LSQPFVISAF FIHAFIDWSL MFNLGMFYDR ELAISEHNVK LSSIIHNHSL 180
  181 IMGKQIINIL PEGSAVLNPE RHPLCLSSDQ KTALIPMFFN ATIPVEVELL RTDLETGHQE 240
  241 SIKLGRVHLR DIERKAKKNS DLDDMQSVVH FEYPAKKPGA YQLGKVLDEY KLEVQRPGPP 300
  301 TFVVPCPKAW VGPTTTPGRC LADLSDLTLQ VEGTPPLKIT YSRAINGKDV SFHFQSLQPE 360
  361 GFMSPLGAIR PTSLVQDDDE DISWARPQRV PVSVNESMYA SGKWQYSVDE VQDGFGNVVK 420
  421 YISPSEDPEG KAKPKELVQD FLVKERPILK LDGCDLRNPL RAARGDSKEL PVKFGIGGTP 480
  481 DSTAHSLSWL FSPIDTLTDT GDHGDVVSVG TFNAKNARDK PRISAPGLYT LKSVSSGGCE 540
  541 GEVREPSSCL LLNPLEPKLS LRSEEIPDTC AGNSIGLQVD LHLIGTPPFI LRYDIIENGK 600
  601 TRHADPVKIP GLRHQMELIP SVSGHHKYIF THISDDVYKG VKLSGPEFTL EQDVKPQASA 660
  661 ILQQTIGKKA CLGDHVTADV MLLGDAPFTL EWEIIHDGKR KAHKATNIEG NEYQISTPPL 720
  721 TQGGEYTLAL SSVQDKRGCR NFLKQELKIS VRRQSPRAAF GQIEHKRKIT GVEGSPLSLP 780
  781 LRLTGEGPWK VSYIKLNDDA ATRQERTVRN DNGYLSVRER GTYQLVDVWD NQCHGVIDPK 840
  841 TSTFEVDWFS RPDMSVLLSH GVQRTETGYR LEDVCEGDVS GFEVGMKGES ILHHCGSAST 900
  901 AKKKFDVALR KESIQADTSK AGTYTYKFTA LEDHLYNSDR NFKPVLVEQK VNSKPTAAFA 960
  961 KPGQTFKYCK SEQGAEEGIP VVLSGVPPFS LEVEIKHQSA ALPEIYRTPV INSDTYEIQI1020
 1021 PRHQLRLGTQ NIRIRDVKDG SGCHSATANI GGPSIQVQLF EAPTIYPLET RTDYCVGERI1080
 1081 SYTLSGSPPF DVWYTFDGVE RKAKSTTTNF RRVAESPGEF VITTISDKSS ECKAPVNVAK1140
 1141 TIHPMPAVKI SRGKNARVDI HEGGEVEILF EFWGTPPFEF TYTRSTNAKK GQKSVVLETR1200
 1201 HDISHEHSKV IRASQEGTYE VVAIKDKFCA FSTMGGDEKG DRKGQKKLGY 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle