YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|66044117, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	14	0.91
Transmembrane Helix	15	34	0.83
Non-Cytoplasmic	35	39	0.68
Transmembrane Helix	40	60	0.91
Cytoplasmic	61	79	0.91
Transmembrane Helix	80	99	0.95
Non-Cytoplasmic	100	148	0.62
Transmembrane Helix	149	163	0.57
Cytoplasmic	164	169	0.78
Transmembrane Helix	170	190	0.93
Non-Cytoplasmic	191	198	0.85
Transmembrane Helix	199	219	0.93
Cytoplasmic	220	228	0.87
Transmembrane Helix	229	248	0.94
Non-Cytoplasmic	249	254	0.83
Transmembrane Helix	255	276	0.89
Cytoplasmic	277	282	0.84
Transmembrane Helix	283	303	0.87
Non-Cytoplasmic	304	318	0.85
Transmembrane Helix	319	338	0.93
Cytoplasmic	339	355	0.83
Transmembrane Helix	356	376	0.94
Non-Cytoplasmic	377	673	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGIPHNPALG YRPEIDGLRA LAVIPVILFH AGMPLFSGGF VGVDIFFVIS GYLITSIILA  60
   61 EKIRGRFSLI NFYERRARRI LPALFVVMLI CLPVAWLTLD PSDLKYFAKS LVAVPTFSSN 120
  121 VLFWLESGYF DATAELKPLL HTWTLAVEEQ YYLFFPLLLM LAWGLGRKRL IVLLMAVALA 180
  181 SLALAQLGAH QDTSNAFYLL PARAWELLAG SFIAFYFAWR PRSIGRASAV DQAATLLGLL 240
  241 LIGYAVIGFD SSTPFPGLNA LVPVLGAVLI IVFAHGKTWV GRALSSRVPV AIGMLSYSAY 300
  301 LWHQPVFAFA RQYNLTEPGL PFMLALTLVS LVLAWLSWRF VEQPFRKAGT FNRGQIFTTA 360
  361 GAASTFFVAL GLLGYVNNGF PQRFAVDPEL HQAFADPLIR DKCDQPLAGK GGKVDFCLFG 420
  421 LADDQAAPEM ALFGDSHSEA LLSTFDAAAR DQGRTLAHIG LGGCLPLLGV DVANGNYAAG 480
  481 VCEALADREF DYVKRQRIKK VVLVARWTLY TGDDYSERTM SKYFLTSRAD PQKSRETSRR 540
  541 VFSQALEHTI EAYRSIGAEV FIVAQVPQQM INPESLYYRL ARDASDSDEQ ALKRVSELSV 600
  601 PMDKHDLLQR FTRQLFLRAS QSKHISLITL DDAFCKDRQC LIGDLHSYYK DFNHLNARGA 660
  661 GLLVGQISHI LDQ