YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|32033535
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.91
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKKFEITND TKIVRHKPLA RVSHWFLVIS FFLTMFTGVA FFFPDFAWLT EILGTPQLAR  60
   61 AIHPFTGIVM FVAFIIMAII YWHHNIPEKN DIRWAKGIVE VLKGNEHAVA YNGKYNLGQK 120
  121 MLFWTLILAM FTLLITGIIM WRKYFSDNFS IQTLRIAILL HSASAFALFT GILVHMYMAF 180
  181 WVKGSIRGMV EGCVTVRWAK KHHPKWLKEE VLPELEKQAN RNN

Type	Start	End	Confidence
Cytoplasmic	1	20	0.98
Transmembrane Helix	21	43	0.92
Non-Cytoplasmic	44	60	0.92
Transmembrane Helix	61	84	0.91
Cytoplasmic	85	121	0.96
Transmembrane Helix	122	141	0.96
Non-Cytoplasmic	142	156	0.87
Transmembrane Helix	157	179	0.92
Cytoplasmic	180	223	0.97