YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42631238
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	28	0.66
Transmembrane Helix	29	51	0.78
Non-Cytoplasmic	52	56	0.82
Transmembrane Helix	57	78	0.90
Cytoplasmic	79	88	0.92
Transmembrane Helix	89	112	0.88
Non-Cytoplasmic	113	117	0.84
Transmembrane Helix	118	138	0.90
Cytoplasmic	139	154	0.88
Transmembrane Helix	155	175	0.93
Non-Cytoplasmic	176	185	0.84
Transmembrane Helix	186	207	0.92
Cytoplasmic	208	218	0.91
Transmembrane Helix	219	238	0.84
Non-Cytoplasmic	239	242	0.53
Transmembrane Helix	243	261	0.77
Cytoplasmic	262	271	0.57
Transmembrane Helix	272	292	0.69
Non-Cytoplasmic	293	296	0.65
Transmembrane Helix	297	319	0.86
Cytoplasmic	320	333	0.85
Transmembrane Helix	334	353	0.92
Non-Cytoplasmic	354	361	0.77
Transmembrane Helix	362	382	0.92
Cytoplasmic	383	618	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQLANPELM KVVILLASSV TIVPLFKRLG LGSVLGYLVA GCLIGPSVFG IVQDPTAVVH  60
   61 LAELGVVMFL FIIGLEMYPE RLWAMRKAIF GRGLLQVGLC GCLLTFSGIY LLGLTKEVSF 120
  121 IAGMGFTLSS TAIVMQSLEE RGLTSTSKGQ RVISTLIFED IAIVPLLASV AFLAPHSKEA 180
  181 TPHTDWVSIG IALSAVVGLI VTGKWLMNPL FRLISKARIR EMMTAGALLV VLGAALAMEI 240
  241 GGLSMAMGAF VAGVMMSESA FRHQLEADIE PFRGLLLGLF FMGVGMSLDL HLVFNHWILL 300
  301 LGIVFLYILG KASAVYIIAR ITRLDHREAI GRMSLMAHGG EFAFVLFSAA ATAEVISNEE 360
  361 QATFTAAVII SMLFSPIIAQ IARKLIQRTE SKHLDQLDEN DLDSIVDLED NVLVIGFGRF 420
  421 SQIVCQTLLI RGISVSVIDR NIENIRAAAK FGFKVYYGDG IRLDVLRAAG IEKAKCVVLG 480
  481 INDTQRIEHI VSQMKEAYPN LPILTRTYDR KTTVSLIKQD VDFIVRETFE SAITLSRATL 540
  541 MKLGIDKIEA EEIIKEVRTL DQERLNEEVL HGFSNEIVKK YWTPRPFIKP HLDTKALNKE 600
  601 TEEILSEKIE EEISNDHS