YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|67922820, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNHSLNQSY TSAKMSNSQS SILQKPITYI SLILLGMGVG IGGTIAFSYP HVFRQQAEAI  60
   61 APSATPEVPP EWSSLPPITS ENFVTDVVKK VGPAVVRIDA SRTVKTEVPP MFKDPFFRRF 120
  121 FGSQVPNVPE EEVQRGTGSG FILSEDGKIV TNAHVIAGSQ EVSVTLKDGR TFTGKVLGTD 180
  181 PITDVAVIDI EADKLPTVKA GNSDNLNVGE WAIAIGNPLG LNNTVTTGIV SATGRSSSQI 240
  241 GVGDKRVDFI QTDAAINPGN SGGPLLNARG EVIGVNTAIF RNAQGIGFSI PINKAQEIAS 300
  301 ELIAKGSVDH PYLGIQMVEI TPEIKQKIQA SGELNINAYS GVLIVQVVPN SPAAASGLKS 360
  361 GDIIQSINQQ SLNTPSQVQQ AVEQVEVGSV IPVEVERNGK ALNLNVKVGV LPNG

Type	Start	End	Confidence
Cytoplasmic	1	26	0.93
Transmembrane Helix	27	49	0.88
Non-Cytoplasmic	50	414	0.98