YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|46120163, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	22	0.91
Transmembrane Helix	23	41	0.94
Non-Cytoplasmic	42	70	0.89
Transmembrane Helix	71	91	0.91
Cytoplasmic	92	107	0.81
Transmembrane Helix	108	128	0.90
Non-Cytoplasmic	129	158	0.91
Transmembrane Helix	159	182	0.86
Cytoplasmic	183	191	0.77
Transmembrane Helix	192	212	0.92
Non-Cytoplasmic	213	228	0.86
Transmembrane Helix	229	248	0.91
Cytoplasmic	249	261	0.85
Transmembrane Helix	262	282	0.91
Non-Cytoplasmic	283	297	0.83
Transmembrane Helix	298	320	0.92
Cytoplasmic	321	326	0.92
Transmembrane Helix	327	345	0.92
Non-Cytoplasmic	346	350	0.71
Transmembrane Helix	351	371	0.91
Cytoplasmic	372	382	0.75
Transmembrane Helix	383	401	0.90
Non-Cytoplasmic	402	419	0.74
Transmembrane Helix	420	441	0.94
Cytoplasmic	442	496	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSTRTKKDV PIWQPLKVIA RSFSPYWIAC IPLAAIITIV WNKAVVAESV ELITAEGNSE  60
   61 AIAQLQGTLN AIWVLIAAIL VIFMNAGFGM LETGFCRQKN AVNILSKNLI VFALATLAYW 120
  121 AIGYSLMFGG PENPFIGFGG WFLSGEPATY GLDPFPAGLP ISVAFLFQAA FAGTAATIVS 180
  181 GAVAERIKFT DFIIFSLLLV GISYPITGHW VWTGNGWLGS IGFSDFAGST VVHSVGGWAA 240
  241 LMGAAILGPR MGKYVEGRPQ AIPGHNMSIA TLGCLILWIG WFGFNPGSQL AADEAVPYIA 300
  301 VTTNLAAAAG GVAATFVAWF KDGKPDLSMI INGILAGLVG ITAGCDGVSY FGAVIIGAVA 360
  361 GVIVVYSVSM IDSLLKIDDP VGAVSVHLVN GIWGTLAVGL FNTESGLFYG GGFAQLGSQI 420
  421 VGIVAIGAFT AIFSGIVWTV LKSTMGIRVS PEEELEGLDV GEHGMEAYAG FLKETDTFSG 480
  481 SGSSTADEDV TTGAGI