YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|53759202, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPEFVFLDAL RDNPALFITC SALLGLMVGS FLNVVIYRLP RMMELAWHAE RLEAEGQPQT  60
   61 EQARYNLITP RSRCPHCQHA ITALENIPII SYMMLGGKCR QCKTAISPRY PLVELLTATL 120
  121 TGLASWHFGY SSLAVASWLI IFALIALTFI DLDTHLLPDD ITLPLLWAGL LFNLDHGFTD 180
  181 ISSAVIGAAA GYLVLWSVYW LFKLITGKEG MGYGDFKLLA ALGAWFGWQL LPAVILLSSV 240
  241 AGSIIGIGLI VLTKHGRETP IPFGPYLALG GIAALFCGEQ LSQLYLGG

Type	Start	End	Confidence
Non-Cytoplasmic	1	14	0.92
Transmembrane Helix	15	37	0.95
Cytoplasmic	38	125	0.90
Transmembrane Helix	126	150	0.83
Non-Cytoplasmic	151	176	0.54
Transmembrane Helix	177	202	0.80
Cytoplasmic	203	212	0.44
Transmembrane Helix	213	228	0.44
Non-Cytoplasmic	229	229	0.50
Transmembrane Helix	230	253	0.87
Cytoplasmic	254	262	0.70
Transmembrane Helix	263	282	0.88
Non-Cytoplasmic	283	288	0.61