YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|73539699, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIEVTNAQLY GWIATFLWPF FRLLALIGTA PLFGESTIPG RVKVGLAALT AMVVSPTLGN  60
   61 LPVVPVYSWQ GLIIILNEVG IGLATGFTMR LVFAIVQQAG EIIGMQMGLG FASFFDRAAG 120
  121 GQTMVLARFL NIIAVLLFLA MDGHLLMLGA LVDSFQGLPI GATPVSGEGW HAVARAGGMV 180
  181 FSSGLLLALP MIAALLTLNL AMGILNRASP QLSIFAVGFP VTLSGGLLVL ALVMPQMGSY 240
  241 MQHMIEAGLD AVNTVLSQFA R

Type	Start	End	Confidence
Non-Cytoplasmic	1	8	0.53
Transmembrane Helix	9	34	0.79
Cytoplasmic	35	43	0.45
Transmembrane Helix	44	64	0.85
Non-Cytoplasmic	65	73	0.40
Transmembrane Helix	74	108	0.64
Cytoplasmic	109	128	0.53
Transmembrane Helix	129	148	0.90
Non-Cytoplasmic	149	178	0.74
Transmembrane Helix	179	201	0.87
Cytoplasmic	202	211	0.74
Transmembrane Helix	212	234	0.92
Non-Cytoplasmic	235	261	0.81