YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|72121188, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	7	0.77
Transmembrane Helix	8	25	0.97
Non-Cytoplasmic	26	31	0.67
Transmembrane Helix	32	51	0.93
Cytoplasmic	52	59	0.67
Transmembrane Helix	60	79	0.87
Non-Cytoplasmic	80	106	0.85
Transmembrane Helix	107	129	0.91
Cytoplasmic	130	140	0.71
Transmembrane Helix	141	161	0.93
Non-Cytoplasmic	162	180	0.85
Transmembrane Helix	181	201	0.94
Cytoplasmic	202	234	0.93
Transmembrane Helix	235	256	0.92
Non-Cytoplasmic	257	271	0.81
Transmembrane Helix	272	292	0.93
Cytoplasmic	293	308	0.81
Transmembrane Helix	309	330	0.87
Non-Cytoplasmic	331	337	0.84
Transmembrane Helix	338	359	0.77
Cytoplasmic	360	365	0.58
Transmembrane Helix	366	386	0.84
Non-Cytoplasmic	387	392	0.64
Transmembrane Helix	393	416	0.74
Cytoplasmic	417	429	0.67
Transmembrane Helix	430	451	0.89
Non-Cytoplasmic	452	453	0.62

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGAVTGTTLL VYALIAVIAL VILIARFKLN PFITLVVVSV LLGFAVGMPM GDIIKSFEAG  60
   61 VGGTLGHIAL VVGLGTMLGK MMAESGGAER IARTLIDFFG EKNVHWAMVT IAFIVGLPVF 120
  121 FEVGFVLLVP IAFNVAKRTG TSMVLVGIPM VAGLSVVHGL IPPHPAALLA VTAYGADIGR 180
  181 TIMYALIVGI PTAAIAGPLF AKLMDRYVKL PDVNPLAAQF TEEDEKVKES HDLPGFGITV 240
  241 FTILLPVLLM LIGSWADLFT TPKTFANDFL KLIGNSVMAL LIAALVSFYT FGKARGFNRD 300
  301 AILKFTNECV APTAIITLVV GAGGGFGRIL RDSGISNAIV DVATNAHVSV LVLGWLVAVM 360
  361 IRIATGSATV AMTTAAGIVA PIAASVPGTR PELLVLTTGA GSLILSHVND GGFWLVKEYF 420
  421 NMTVTQTFKT WSVCETLISV VALLLTLALA TVV