YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	COXX_ANAVT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	28	0.92
Transmembrane Helix	29	46	0.92
Non-Cytoplasmic	47	52	0.82
Transmembrane Helix	53	75	0.93
Cytoplasmic	76	95	0.97
Transmembrane Helix	96	116	0.94
Non-Cytoplasmic	117	121	0.74
Transmembrane Helix	122	143	0.90
Cytoplasmic	144	149	0.91
Transmembrane Helix	150	170	0.92
Non-Cytoplasmic	171	176	0.77
Transmembrane Helix	177	197	0.91
Cytoplasmic	198	218	0.78
Transmembrane Helix	219	240	0.74
Non-Cytoplasmic	241	245	0.61
Transmembrane Helix	246	265	0.88
Cytoplasmic	266	279	0.95
Transmembrane Helix	280	302	0.87
Non-Cytoplasmic	303	318	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIETNVSRRH HESFLQVIQS YYQLTKPRII PLLLITTAGS MWIAAQGQVD PVLLLVTMAG  60
   61 GTLAAASAQT INCIYDRDID YDMERTRHRP MPSGKVQVRD ALIFAIALAV LSFTLLTVFA 120
  121 NLLAASLALS GIIFYVLIYT HWLKRHSTQN IVIGGAAGAI PALVGWAAVT GTLSWSAWLI 180
  181 FAIVFLWTPP HFWALALMIR DDYAKVGIPM LPVVEGNAAT VKQIWYYTLI TVVATLLLVY 240
  241 PLHSSGIVYA AIAISLGAVF IRKSWRLLHN PEDRPTAREL FLYSISYMML LCLGMVIDSL 300
  301 PLTHHLINAV INQLHLIS