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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|47216170
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.72
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDRLHSSMRK RLYSLPQHIG HKASIMSEGE DADKDARRKS IRMKPLPSPS PTSAGSCKGI  60
   61 GETKSGESGI METDIGRPMK TSSNGDCRRF RGSLSSITSR HVHDSNSAEE RRLITEGDVT 120
  121 PSEESPPGAI GDGPPEQGAQ GASGGGGGGG GGGQKEPPDQ QPGFVKLDGI DQILPDDERL 180
  181 YQAGFMHRQF GAMLQPGVNK FSLRMFGSEK AVEREQERVK SAGFWIIHPY SDFRFYWDLT 240
  241 MLLLMVGNLI IIPVGITFFK DEHTPPWIVF NVVSDTFFLM DLVLNFRTGI VKEDNTEIIL 300
  301 DPQQIKIKYL RSWFVVDFIS SIPVDYIFLI VETRIDSDFY KTARALRIVR FTKILSLLRL 360
  361 LRLSRLIRYI HQWEEIFHMT YDLASAMVRI VNLIGMMLLL CHWDGCLQFL VPMLQDFPAD 420
  421 CWVSKNKMVN DTWGQQYSYA LFKAMSHMLC IGYGMYPPVG MTDVWLTILS MIVGATCYAM 480
  481 FVGHATALIQ SLDSSRRQYQ EKYKQVEQYM SFHKLPADMR QRIHDYYEHR YQGKMFDEES 540
  541 ILGELNEPLR EEIINFNCRK LVASMPLFAN ADPNFVTSML TKLRFEVFQP GDYIIREGTI 600
  601 GKKMYFIQHG VVSVLTKGNK ETKLSDGSYF GAPLLRRLRM GASQYKQVEQ YMSFHKLPAD 660
  661 MRQRIHDYYE HRYQGKMFDE ESILGELNEP LREEIINFNC RKLVASMPLF ANADPNFVTS 720
  721 MLTKLRFEVF QPGDYIIREG TIGKKMYFIQ HGVVSVLTKG NKETKLSDGS YFGEICLLTR 780
  781 GRRTASVRAD TYCRLYSLSV DNFNEVLEEY PMMRRAFETV ALDRLDRIGK KNSILQHKVQ 840
  841 HDLSSGVLNY QENEIIQQIV QHDRDMAHCA HLMQNVPPQT PPSPTPVIWA PLIQAPLQAA 900
  901 AATTSVAIAL THHPHLPHTL FRPPVSVLGS LKDPSSRMKK IHTFALSTAP GSATDSPSST 960
  961 PSKTLTEVDM PLLTSFQAQD MPSGTLVTGS SKEGSGIEDH HRPNLSDSGL GGGGLSAFPF1020
 1021 EQFSSTGSPS SSIAQLHSQP KRQQSFRSGT PPLSNLFHQG STGGSTGSGL SGGACGTTGW1080
 1081 SSGGAVGESV EGATGGDSSW VGEDFTTGTV DVNPGINFGL GMGSVGSIGE ISGESIGRIS1140
 1141 EGLMGAAFGR GSGASSGASS ASGGASCGPL ADVARSLKGT ARGSFGTSSG GSVGSSGETL1200
 1201 AVVTTEGSLG RASGKTKSVL SRGLTIGSTG ESHGDSMGLN SGGPFGGASV GTLVSHLGGG1260
 1261 SSDSGGGMTL GHSSRAAGGS HIGLQQCGLG ANSGGGTTGH IISSRCQSPI FTSSSSFMPG1320
 1321 QVPHCHPPSK TPQVSSLQQF AGGGRTTGGL NLLHSPPQGS PSTCRRQHSQ QPPEGSPSSL1380
 1381 GHFSLTGLPS GILPHQMSID RSALASLAQY GSANASPCLT PVAPSPTIQS PVAGRTFHYS1440
 1441 DPPNTTVSNS SLPMAHSSFP SQLPSQSPQT GRDSPLGRFS EDLKLLSSSH PSLPQEVAQA1500
 1501 LGHHAPFSSV ET

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle