YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|75909040, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.65
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	22	0.63
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	37	0.74
Transmembrane Helix	38	58	0.89
Cytoplasmic	59	66	0.67
Transmembrane Helix	67	86	0.89
Non-Cytoplasmic	87	91	0.64
Transmembrane Helix	92	113	0.91
Cytoplasmic	114	121	0.75
Transmembrane Helix	122	144	0.91
Non-Cytoplasmic	145	213	0.51
Transmembrane Helix	214	237	0.88
Cytoplasmic	238	250	0.49
Transmembrane Helix	251	271	0.85
Non-Cytoplasmic	272	277	0.57
Transmembrane Helix	278	296	0.91
Cytoplasmic	297	321	0.65
Transmembrane Helix	322	344	0.90
Non-Cytoplasmic	345	376	0.65
Transmembrane Helix	377	398	0.90
Cytoplasmic	399	406	0.56
Transmembrane Helix	407	425	0.95
Non-Cytoplasmic	426	431	0.55
Transmembrane Helix	432	453	0.93
Cytoplasmic	454	461	0.61
Transmembrane Helix	462	482	0.95
Non-Cytoplasmic	483	506	0.64
Transmembrane Helix	507	525	0.92
Cytoplasmic	526	549	0.63
Transmembrane Helix	550	576	0.88
Non-Cytoplasmic	577	591	0.60
Transmembrane Helix	592	611	0.92
Cytoplasmic	612	619	0.50
Transmembrane Helix	620	640	0.85
Non-Cytoplasmic	641	644	0.59

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFKPLLTPIL LLLPLLFLHS NPITTPEDIL LYIKLPRTVI GILSGASLGI AGALFQTVTR  60
   61 NPLASPATLG INAGAYLAIT ATTIFAPEIF AWSPLLVAFT GGLLAALLVY AIAGKEITPI 120
  121 RLTLSGMAVS LALAAFTSAL QLLYENQTRD LFFWGAGSLL QTNWQGSIYA APRVLLGAIA 180
  181 VFLIAKPLDV LLMGEDVARS LGSKVQWTRL SSTLLGIFLA SVAVSVIGPI GFVGLVAPHI 240
  241 GKLMGCRQHQ ILLPSAAIWG AVILLGADFI AQQISSELPA GGITALLGAP FLVWLVRSSP 300
  301 RLLTKTEGNN ALLIQIKSRL QYPVLLLAGC SCLLLVLLIG LSLGNIHLDI HQLTQVFNGN 360
  361 SDALTERIVL YLRLPRLLVA LLAGAALAIS GLLLQGVVRN PLAGPEIMGI TSGAGFGALL 420
  421 VLVLLPNTPV TFIPIAAFIG AVVAFGVVYL AAWQNGVAPG RLALIGIAVS AFCAAGINLL 480
  481 VVKSKLQVSQ SLVWLAGSTY ARQWDEVWQL LAFPLILLPL GWLFARKLDV MALGEDLPQI 540
  541 LGMRLQQARG VILAIAVALA AAAVSTVGTI SFVGLIAPHA ARLLVGSRHR QLVPIAAIFG 600
  601 AILVTLADTV GRVVLAPKEI PSGLVTALIG TPYFLWLLGG NQKH