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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|47222870
Protein type: Transmembrane
Type Confidence: 0.98
Topology Confidence: 0.50
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATRRLTDAF LLMRNNAIQN RQILAEQVST YEPRLSTRSN AAVSVFCVLK LADDRMALVS  60
   61 GISLDPEAAI GVTKKLPPKW IEGVDEIQYE ITRVRQKMKE LASLHDKHMN RPTLDDSSEE 120
  121 EHAIEITTQE ITQMFHRCQR AVTALQSRCG HCTEQEERLL RNVVSSLAQS LQDLSITFRH 180
  181 TQSSYLKREA LSPESVFHTR VSRLFVGVLS CHGFFFPGMK NREERSKHFF DSGPLMDEDD 240
  241 DLAVYEKGFT DDQLMLVEQN TVMVEERERE IRQIVQSISD LNEIFRDLAG MVVEQGTVLD 300
  301 RIDFNVEQAC VKTEDGLKQL QKAEQYQKKN RKMLVILILF VIVIVLIIIL YHDRHQAARN 360
  361 PLYYSERQEQ RREPSYWTLP GSRVASQDYA LWMEPEPVGL SSSHFPFTLD RQPQHHRDVG 420
  421 AYQPLEDREW PQRASREYER GIPREGWPRR WDTCNPARYG REVSTKRNNS SYRELEAWAA 480
  481 RYSHSLQRRR RIEAELRGAS QGPAESSGAP ERDARGGTTT LQRGSHPGLC EGAGGRQAHA 540
  541 LQAALADTGL PPRDKSCSQR RILSHPPGYI APPPYDTPQK SSSVSQQGDT SWEQEGKTQT 600
  601 YWSQPLLKKQ DTAADGRMRK TERFTKADAS QHHFCSHYSK PGADSLPGSS AGYVPRPCVE 660
  661 SEGLLSPVLP PLPNKDPSSK IIEGRKFRLN KKAGGVTIFC LVSRMADATE VPARPVGAEG 720
  721 GAAPEGLREP DSGRKLADEV DYRGPESQSG ASDTGDGHAH REAASGSGTQ EPETGVKGEE 780
  781 ERAKDADAAG MQSGKPTWVR YPLWREPSFP VRSEHVGSPL KAEGGEGESG CNRSLSAEVQ 840
  841 CGVGTEEEEG EAEGAGGPPS ADATRVVVKM EQIPPPKKEH VHYLDAAPHS EEGQNTARNT 900
  901 KLEPPNAEKP DKEPDRDVPD RVEPEPRTIP DPCWSSAGLH REALAVRSER ILGIPLKESV 960
  961 AEQKTEADPS FAAQVSDGEP LEEDKTEQEL WQNQPDLEPS TFSPVEAKDQ LDDEGGEESA1020
 1021 EPEEEKSRPA HPETQTEASG GSDDGETRAD SDENADEQSE RGSSIVEDGS ASPLLRPSTG1080
 1081 SWPPPSQDGQ SPDVLPPPLP PTSIPASIPE NPGSECTDLD PAAPITAAAN VSPAPTPSQH1140
 1141 LASPPPPPPP PPPPQDPQST PSHDSENQSQ PASSLLDQDE DDETSRLTNT EMSEEFEDVC1200
 1201 KDETEEAVSR QRGEVGEHAQ ADGRRETNLV NEQQDKKDEV LVDSGVEETE TPTEVSQALI1260
 1261 QEEENPGSAG TQEEDTELTE ELEEPNTRPA CLQPAGTNTN DMEPPKEAQA GLSEEKSGED1320
 1321 RISPPPDTDD ASVIEGTNLP TSSSPPLPPE GSQSVASDRA LSQEPQYPKS LWDAVNRIRK1380
 1381 HTAPDSENEE EELAEVWDPE NVGEDSGRTR GAQDTVAETE EVLVHER

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle