YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|47225496
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	31	0.61
Transmembrane Helix	32	54	0.82
Non-Cytoplasmic	55	63	0.52
Transmembrane Helix	64	85	0.93
Cytoplasmic	86	93	0.51
Transmembrane Helix	94	118	0.89
Non-Cytoplasmic	119	154	0.54
Transmembrane Helix	155	171	0.52
Cytoplasmic	172	180	0.60
Transmembrane Helix	181	202	0.79
Non-Cytoplasmic	203	212	0.83
Transmembrane Helix	213	235	0.88
Cytoplasmic	236	281	0.85
Transmembrane Helix	282	302	0.73
Non-Cytoplasmic	303	313	0.54
Transmembrane Helix	314	335	0.77
Cytoplasmic	336	345	0.64
Transmembrane Helix	346	368	0.79
Non-Cytoplasmic	369	375	0.56
Transmembrane Helix	376	399	0.91
Cytoplasmic	400	410	0.57

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GAHTLSKDDV NYRMHFRMIN EQQVEDITIE FFYRPHTITL LTCTVLSLMY FAFTRDDGNC  60
   61 DSNLWVGLIL VISFFLVISV LAFPNGPFTR PHPAIWRIVF GLSVLYFLFL VFIIFLNWQQ 120
  121 VKQLMYWLDP NLRYAKREAD IMEYAVNCHA ITWERILSHF DIFAFSHFWG WGMKALLIRS 180
  181 YGLCWTISIT WELTELFFMH LLPNFAECWW DQVILDILLC NGGGIWLGMT VCRFLEMRTY 240
  241 HWASIKDIHT TTGKIKRAVL QFTPASWTFV RWLDPKSSLQ RVAGVYLFMI IWQLTELNTF 300
  301 FLKHIFVFPA SHPLSWCRIL FVGIITAPTV RQYYAYLTDT QCKRVGTQCW VFGAIAFLEA 360
  361 LACIKFGQDL FSKTQILYVI LWLLCLAFIT FLCLYGMVWV GETYGPGEKV