YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|68056384, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	14	0.84
Transmembrane Helix	15	36	0.91
Non-Cytoplasmic	37	65	0.78
Transmembrane Helix	66	100	0.75
Cytoplasmic	101	129	0.69
Transmembrane Helix	130	152	0.89
Non-Cytoplasmic	153	173	0.80
Transmembrane Helix	174	194	0.95
Cytoplasmic	195	214	0.76
Transmembrane Helix	215	236	0.81
Non-Cytoplasmic	237	279	0.96
Transmembrane Helix	280	301	0.89
Cytoplasmic	302	309	0.84
Transmembrane Helix	310	325	0.89
Non-Cytoplasmic	326	332	0.54
Transmembrane Helix	333	362	0.74
Cytoplasmic	363	381	0.47
Transmembrane Helix	382	402	0.91
Non-Cytoplasmic	403	701	0.56

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWKNVFGVLQ RIGKALMLPV AILPAAGLLL AFGTAFQNPN LTQYLPFLEN DALVVIWRVM  60
   61 QDAGDIIFAN LGLLFAVGVA IGLANGEGVA GLAAIVGFLI MNKVISSFLQ ITPEKITEAQ 120
  121 KSSDLSYATV LGIPTLQMGV FGGIIAGLIA AYSYNKFFKI KLPDFLGFFA GKRFVPIATA 180
  181 LFSLVAGFAL SYIWPPIGTG INTFSKTIIE SNETLSAFIF GLVERSLIPF GLHHIWYSSF 240
  241 WFQFGEYTDK AGNLVNGDQR IFFAQLKDGV PFTAGTYMTG KYPFMMFGLP AACLAMYHTV 300
  301 AKDRRKAVEG LYFSAALTSF LTGITEPVEF SFVFVAPLLF AVHAVFAGLS FMIMDILNVK 360
  361 IGMTFSGGLI DYTLFGILPN RTSWWLVIPV GLVFAVIYYF GFRFVIQKFD LKIPGREAIQ 420
  421 EGAATAGATA GELPYEILQA FGGPSNIKHL DACITRLRIT VNDKSGVNKE RLKQLGAAGV 480
  481 LEVGDNVQAI FGPKSDGIKT EMAEIMNDPN YQPPVKPEAD PIPQVPTGAE ARTENRTDDR 540
  541 SGLAGTDGAY VPSEGYVSPL SGVIRSLDDV PDQVFSGRMM GDGYAIEPTE GYVVSPVSGE 600
  601 ITTFFPTKHA IGILADNGDE ILIHIGIDTV SLEGKGFEAL AKAGDRVEPG SPLLNVDLEQ 660
  661 IRPLVPSLLT PIIVTNSGDR KVSVDVGKTV EAGEKISYDI K