YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|171991299, gi...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.99
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKLLLPVLL LLTLVIAACG NTDKKEDTSS ADTKKETITY KSETGDVEVP ANPKRVVVLA  60
   61 GFAGNVMALD VPLVGVDSWS KSNPKFDLKN VKEVSEENVE KVIELEPDLI IGYNTTKNID 120
  121 KFKKIAPTVT YTYGKVDYLT QHIEIGKLLN KEQEARDWVK DFKTRAADAG KEIKAKIGED 180
  181 KTVSVIESFD KQLYVFGDNW GRGTEILYQE MKLKMPKKVT EMALKDGYYA LSPEVLPEYA 240
  241 GDYLIFSKTA EADNSFTETD TYKNIPAVKN NHVFEVDSKE FYFNDPLTLE RQLEFFKKSF 300
  301 LGA

Type	Start	End	Confidence
Signal Peptide	1	20	0.94
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	303	0.99