YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|134138117, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDWILICKAL ILGVVEGLTE FLPVSSTGHL IVAGSFLNFN DAHAKTFDVV IQFGAILAVC  60
   61 WEYRERIVSV VCGLPSRPDA RRFTLNVVIA TIPAIALGLL LEKKIKAVLF SPVPVAFALV 120
  121 VGGAIILWAE ARQRERSEPP RVQSVDALTP LDALKVGIAQ CFALVPGMSR SGSTIIGGML 180
  181 FGLDRRVATE FSFFLAIPII FGATLYETVK DWQAFTVDSL GLFALGLVAA FVSAFVCVRW 240
  241 LLRFVATHDF TVFAWYRIAF GLFVLLVGYS GWLNWA

Type	Start	End	Confidence
Cytoplasmic	1	9	0.84
Transmembrane Helix	10	33	0.60
Non-Cytoplasmic	34	43	0.61
Transmembrane Helix	44	61	0.67
Cytoplasmic	62	82	0.87
Transmembrane Helix	83	101	0.96
Non-Cytoplasmic	102	107	0.83
Transmembrane Helix	108	129	0.93
Cytoplasmic	130	186	0.89
Transmembrane Helix	187	206	0.89
Non-Cytoplasmic	207	219	0.78
Transmembrane Helix	220	242	0.92
Cytoplasmic	243	252	0.87
Transmembrane Helix	253	273	0.95
Non-Cytoplasmic	274	276	0.85