YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|78067965, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	28	0.98
Transmembrane Helix	29	51	0.90
Non-Cytoplasmic	52	85	0.92
Transmembrane Helix	86	107	0.93
Cytoplasmic	108	120	0.85
Transmembrane Helix	121	141	0.95
Non-Cytoplasmic	142	161	0.83
Transmembrane Helix	162	184	0.84
Cytoplasmic	185	204	0.89
Transmembrane Helix	205	228	0.83
Non-Cytoplasmic	229	261	0.89
Transmembrane Helix	262	282	0.96
Cytoplasmic	283	308	0.92
Transmembrane Helix	309	333	0.90
Non-Cytoplasmic	334	363	0.96
Transmembrane Helix	364	385	0.93
Cytoplasmic	386	395	0.89
Transmembrane Helix	396	420	0.91
Non-Cytoplasmic	421	429	0.87
Transmembrane Helix	430	449	0.88
Cytoplasmic	450	479	0.88
Transmembrane Helix	480	501	0.80
Non-Cytoplasmic	502	536	0.88
Transmembrane Helix	537	559	0.92
Cytoplasmic	560	575	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTVLTERRR GASAPADVRQ ITHWHDRIAQ LALLAMAALM SMFLLLPLAL VVQKCFVDAD  60
   61 GRFVGAHNFV EYLEDSGVLR SMLHSLTVGA LVTSIVVPMA FTFAYALTRS CMPFKNAART 120
  121 VALLPLLAPT LLSAVSFIYW FGNAGLLKPL LHGHSIYGLP GIVLSMVYAS FPHVLMILVT 180
  181 ALSLADGRLY EAADAMGTRR IRKFFTITLP GAKYGLISAT MVAFTMCIND FGVPVVIGGS 240
  241 YNVLSTDIYK LIIGLQDFNR SAVVSLMLLC PALVAFGVDF FIRRRQQSQL GARSTPYQPK 300
  301 PSRGFDAAML AYCGIVCAFF IAVVGISVFA SFVKFWPYQM SLGLQHYKMG LIGAGIFDAY 360
  361 KNSLRMAATV ALGGTIVVFG GAYLIEKTRG ARWLRGFIAL CAILPMGVPG LVLGISYIFL 420
  421 FNAPGNPLNG LYGSLWLLAI VTVVHYYASS HLTAVTALRQ IDSEFEAVSA SLKVPFYKTF 480
  481 LRVTVPVCLP AILLIARYLF VNGMTTVSAV AFLYSPDTQP ASVAILNLDD AGQMGPAAAM 540
  541 ATLVLATSSF ACVLFACISH RLLRRTQAWR NPHRH