YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|78064696, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFSVTYEQLN GWLTAFLWPF VRMLALVATA PVVGHAAVPV RVKIGLAAFM ALVVAPTLGA  60
   61 MPDVTVFSAQ GIWILVTQFL IGAAMGFTMQ IVFAAVEAAG DFIGLSMGLG FATFFDPHTS 120
  121 GATPVMGRFL NAVAMLAFLA VDGHLQVFAA LTASFQSLPV SADLLHAPGW RTLAGFGTTV 180
  181 FEMGLLLALP VVAALLIANL ALGILNRAAP QIGVFQIGFP VTMLVGLLLV QLMIPNLVPF 240
  241 VAHLFDMGLD AMGRVLIGWH

Type	Start	End	Confidence
Cytoplasmic	1	11	0.56
Transmembrane Helix	12	38	0.77
Non-Cytoplasmic	39	43	0.43
Transmembrane Helix	44	66	0.82
Cytoplasmic	67	70	0.48
Transmembrane Helix	71	94	0.76
Non-Cytoplasmic	95	97	0.44
Transmembrane Helix	98	115	0.78
Cytoplasmic	116	128	0.56
Transmembrane Helix	129	150	0.80
Non-Cytoplasmic	151	182	0.70
Transmembrane Helix	183	205	0.86
Cytoplasmic	206	211	0.82
Transmembrane Helix	212	234	0.84
Non-Cytoplasmic	235	260	0.56