YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|47573671
Protein type:	Transmembrane
Type Confidence:	0.79
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METFYEVMRR QGISRRSFLK YCSLTATSLG LGPAFVPQIA HAMENKPRTP VLWLHGLECT  60
   61 CCSESFIRSA HPLAKDVVLS MISLDYDDTL MAAAGHQAEA ILEEIMAKYK GNYILAVEGN 120
  121 PPLNQDGMSC IIGGKPFIDQ LKHVAKDAKA IISWGSCASW GCVQAAKPNP TQATPVHKVI 180
  181 FDKPIIKVPG CPPIAEVMTG VITYMLTFDR LPELDRQGRP KMFYSQRIHD KCYRRPHFDA 240
  241 GQFVEHFDDE SARRGYCLYK VGCKGPTTYN ACSTTRWNEG TSFPIQAGHG CIGCSEDGFW 300
  301 DKGSFYDRLT NIHQFGIEAN ADQVGGAAAG VVGAAAVAHA AVSAIKRATQ KTDSKTNETS 360
  361 RAGQ

Type	Start	End	Confidence
Cytoplasmic	1	17	0.75
Transmembrane Helix	18	40	0.69
Non-Cytoplasmic	41	364	0.95