YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|4193819
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	136	0.72
Transmembrane Helix	137	156	0.90
Cytoplasmic	157	164	0.75
Transmembrane Helix	165	183	0.82
Non-Cytoplasmic	184	189	0.66
Transmembrane Helix	190	211	0.86
Cytoplasmic	212	220	0.79
Transmembrane Helix	221	243	0.88
Non-Cytoplasmic	244	248	0.81
Transmembrane Helix	249	269	0.91
Cytoplasmic	270	334	0.98
Transmembrane Helix	335	357	0.89
Non-Cytoplasmic	358	366	0.79
Transmembrane Helix	367	386	0.88
Cytoplasmic	387	396	0.73
Transmembrane Helix	397	416	0.91
Non-Cytoplasmic	417	426	0.68
Transmembrane Helix	427	446	0.86
Cytoplasmic	447	457	0.71
Transmembrane Helix	458	479	0.66
Non-Cytoplasmic	480	486	0.52
Transmembrane Helix	487	505	0.78
Cytoplasmic	506	550	0.67

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFNDLLQQV GGVSRFQQIQ VTLVVLPLLL MASHNTLQNF TAAIPTHHCR PPADANLSKN  60
   61 GGLEVWLPRD RQGQPESCLR FTSPQWGLPF LNGTEANGTG ATEPCTDGWI YDNSTFPSTI 120
  121 VTEWDLVCSH RALRQLAQSL YMVGVLLGAM VFGYLADRLG RRKVLILNYL QTAVSGTCAA 180
  181 FAPNFPIYCA FRLLSGMALA GISLNCMTLN VEWMPIHTRA CVGTLIGYVY SLGQFLLAGV 240
  241 AYAVPHWRHL QLLVSAPFFA FFIYSWFFIE SARWHSSSGR LDLTLRALQR VARINGKREE 300
  301 GAKLSMEVLR ASLQKELTMG KGQASAMELL RCPTLRHLFL CLSMLWFATS FAYYGLVMDL 360
  361 QGFGVSIYLI QVIFGAVDLP AKLVGFLVIN SLGRRPAQMA ALLLAGICIL LNGVIPQDQS 420
  421 IVRTSLAVLG KGCLAASFNC IFLYTGELYP TMIRQTGMGM GSTMARVGSI VSPLVSMTAE 480
  481 LYPSMPLFIY GAVPVAASAV TVLLPETLGQ PLPDTVQDLE SRKGKQTRQQ QEHQKYMVPL 540
  541 QASAQEKNGL