YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|111183097
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	13	0.96
Transmembrane Helix	14	35	0.94
Non-Cytoplasmic	36	57	0.87
Transmembrane Helix	58	81	0.90
Cytoplasmic	82	99	0.86
Transmembrane Helix	100	121	0.87
Non-Cytoplasmic	122	144	0.84
Transmembrane Helix	145	167	0.89
Cytoplasmic	168	180	0.92
Transmembrane Helix	181	204	0.91
Non-Cytoplasmic	205	234	0.88
Transmembrane Helix	235	257	0.85
Cytoplasmic	258	268	0.83
Transmembrane Helix	269	290	0.91
Non-Cytoplasmic	291	300	0.91
Transmembrane Helix	301	321	0.90
Cytoplasmic	322	334	0.77
Transmembrane Helix	335	357	0.90
Non-Cytoplasmic	358	372	0.90
Transmembrane Helix	373	397	0.88
Cytoplasmic	398	406	0.91
Transmembrane Helix	407	429	0.87
Non-Cytoplasmic	430	449	0.85
Transmembrane Helix	450	469	0.95
Cytoplasmic	470	512	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SRQWLFSTNH KDIGTLYFIF GAWAGMVGTS LSILIRAELG HPGAFIGDDQ IYNVIVTAHA  60
   61 FIMIFFMVMP IMIGGFGNWL VPLMLGAPDM AFPRMNNMSF WMLPPSLTLL ISSSMVENGA 120
  121 GTGWTVYPPL SSGIAHAGAS VDLAIFSLHL AGISSILGAV NFITTVINMR SPGITLDRMP 180
  181 LFVWSVVITA VLLLLSLPVL AGAITMLLTD RNLNTSFFDP AGGGDPILYQ HLFWFFGHPE 240
  241 VYILILPGFG MISHIITQES GKKETFGNLG MIYAMLAIGL LGFIVWAHHM FTVGMDVDTR 300
  301 AYFTSATMII AVPTGIKIFS WLATLHGTQL TYSPAMLWAF GFVFLFTVGG LTGVVLANSS 360
  361 IDIVLHDTYY VVAHFHYVLS MGAVFAIMAG FVHWYPLLTG LTMNPTWLKI QFSIMFVGVN 420
  421 LTFFPQHFLG LAGMPRRYSD FPDSYLTWNV VSSLGSTISL FAILYFLFII WESMITQRTP 480
  481 AFPMQLSSSI EWYHTLPPAE HTYAELPLLT NN