YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|3641336
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFDKTRLPYV ALDVLCVVLA SMPMAVLNLG QIYPFQRGFF CNDNSIQYPY HDSTVASTIL  60
   61 TIVGLGLPIS SMIIGETLSV YCNLLHSNSF IRNNYIATIY KSIGTFLFGA AASQSLTDIA 120
  121 KYSIGRLRPH FLSVCDPDWS KVNCSDGYIE YYVCRGNAEK VKEGRLSFYS GHSSFSMYCM 180
  181 VFVALYLQAR MKGDWARLLR PTLQFGLVAA SIYVGLSRVS DYKHHWSDVL TGLIQGAIVA 240
  241 ILVAVYVSDF FKARNSPFQE RKEEDSHTTL HETPTAGNHY RSNHQP

Type	Start	End	Confidence
Cytoplasmic	1	8	0.92
Transmembrane Helix	9	30	0.91
Non-Cytoplasmic	31	54	0.90
Transmembrane Helix	55	80	0.80
Cytoplasmic	81	96	0.78
Transmembrane Helix	97	116	0.72
Non-Cytoplasmic	117	167	0.78
Transmembrane Helix	168	189	0.82
Cytoplasmic	190	197	0.77
Transmembrane Helix	198	217	0.86
Non-Cytoplasmic	218	228	0.70
Transmembrane Helix	229	251	0.87
Cytoplasmic	252	286	0.87