YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|7521452, gi|9...
Protein type: Transmembrane
Type Confidence: 0.80
Topology Confidence: 0.78
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKVQATMST EIALDTLQAA NSIKRLTQLV NSSTNAWKAQ ESQMRSVGDY LGAAQAKYDG  60
   61 LGNSIQNQQQ KIEKLKQEQS QLKGTTAETA EQFLKYQQQI DQATTRLASL ESQQKKAKQS 120
  121 LDYHKSGLAE LQKEYKPKNE ASETYVKRLK AEGKEDEARQ EQLKQYKGAI SNLNKQYEKQ 180
  181 KEMLERIAKQ SGKTSDEYRK QKQRLDETAT SMAHARNTAE KLNNEIKQIQ HSRTIVGRLK 240
  241 NSFEHLGNEI DKTEQKPSRL KGLFGATFAA NLISNGFQNA LGAIKGKFDE IAQSSAEYVK 300
  301 CQQTMNATWL TLTGNAEEGK KMVDMTNQMA QAAANSTEMV DGMNQKFYAV THNTELTKQQ 360
  361 TQAILTLQDA FGQTDAAVEN FSTQWAQMIA NGKVQGQDMM SIINVFPEMK NQLKEVAAQE 420
  421 LGIADMTQDK YAELQKDGKI PAEMAQKALF ELQDKYKDAT ANFSTTIGGL ERTIQSRMPA 480
  481 VVAAFRDPID QMKNPFLQQI GNWVADPKTE TKFKELGEHV SKGLGTIMDA FSKVFNLGNG 540
  541 TDKLNGFMDG LNKFVDNLSQ KIANNAPKIV AFFKETKDSL IALFSIGKDF ASGVWETAVF 600
  601 MIKGVAGAFN LMTGKGKKAK GKVTSLSKAL GSIAEHKTAI KTVGSLFATY FVGSKVASGV 660
  661 MKVAKAINAV KNSTIATAAA TKAAKAAQMA MAGAQKVATG VQWALNAAIS ANPIGAILVG 720
  721 ITALIAGFVM LYKHNKKFKK LVDGMFNAAK KAFDKIFKVT KEIFGKIINF FKKDWKQVLL 780
  781 FIANPIAGAF ALIYKHNKKF KKFVDGIAKS VKKAFGKVVN FFKKGWEKIS GIFKAIKNGF 840
  841 SKVGELFSNV AKGLVKHAKN LGKGFAKHMS NLGKDWGKKW DGIKNSASNA WEKIKTSAGQ 900
  901 GMTILGKNID EHHKGISKNW SDGWENSKTF LSKKWDEIGE LTQNKFGVNI TKIITDALTS 960
  961 IADFFTNTWD NVKKGFGDMW DNLKSLARDG INAVIGIPNK GIDGINGLIH DFGGPKNAIG1020
 1021 KIPEVPKFAN GTGLFNGYRN PITKTTLALL NDGNDSPETG NQEAVIMPNG DIHPVPGRNT1080
 1081 YAVLPAGAEV LNASEWAALS GAKPFAKGTG FWSKIWNTTT NVAGSVWNGL KNGVDKFKKM1140
 1141 IDFVRDVIKD PVGTMAKKFS PNSDKLDGMF SHLGNALYKK PVEEAKNWWK ELWSMANASM1200
 1201 DEGTAAMGAK GDDYRFKNKA KDAGADPWGY YFRECVSFVA SRLANLGVSS SLFSHLGDGR1260
 1261 QWVNARVPHL SRPKPGSVAV YTGGPISSNH VDFVTAVHGD TYDGEEYNYG GNGQYHQYAG1320
 1321 RHVKNAATFL DFGVRDSGSG DNGKPLKDRN NPLQSLIKRQ VGGMFDWIKK TLGPLLSPAW1380
 1381 GGEDGPQGTG VARWRDSVVK ALEANGIEAN NFRVSKILAT IKRESNGNPN AQNNWDINAL1440
 1441 RGDPSIGLMQ TIGRTFNAYK HPGHDNIRNG YDNLLAAINY IKHRYGTSDA AFNRVAAYGY1500
 1501 ANGGLVHKNG VYELAEGDMP EYVIPTDIAK RGRAWQLLTE AVARFAGDAP QSNHDTNSDR1560
 1561 GRVSVLESKL DVMIGLLSQL VTNDSKPIEI QNIIDGRSVS NGLAPFMTKA TNEYERRQAL1620
 1621 LGGSII

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle